GFI1B (Gallus gallus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGALG00000003478 T095837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.812 0.942
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.812 0.942
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.812 0.942
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.810 0.935
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.810 0.935
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.810 0.935
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.810 0.935
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.810 0.935
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.810 0.935
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.800 0.928
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.787 0.855
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.786 0.899
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.786 0.899
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.786 0.899
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.786 0.899
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.786 0.899
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.786 0.899
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.786 0.899
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.786 0.899
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.784 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000005496 C2H2 ZF 170 193
ENSGALP00000005496 C2H2 ZF 199 221
ENSGALP00000005496 C2H2 ZF 227 249
ENSGALP00000005496 C2H2 ZF 255 277
ENSGALP00000005496 C2H2 ZF 283 305
ENSGALP00000005496 C2H2 ZF 311 334

Links

Other C2H2 ZF family TFs
Other Gallus gallus TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_03240 Exophiala aquamarina A1O9_03240 I
ACLA_015940 Aspergillus clavatus CADACLAG00001153 I
AFUA_5G12930 Aspergillus fumigatus CADAFUAG00006653 I
AFUA_7G04170 Aspergillus fumigatus CADAFUAG00009404 N
ANIA_06846 Aspergillus nidulans CADANIAG00007644 D
ATEG_04297 Aspergillus terreus CADATEAG00009296 N
AUEXF2481DRAFT_456199 Aureobasidium subglaciale AUEXF2481DRAFT_456199 I
CADAFLAG00000127 Aspergillus flavus CADAFLAG00000127 N
CADANGAG00010600 Aspergillus niger CADANGAG00010600 N
CaO19.1168 Candida albicans CaO19.1168 I
CaO19.8761 Candida albicans CaO19.8761 I
CD36_10810 Candida dubliniensis CD36_10810 I
CTRG_03493 Candida tropicalis CTRG_03493 I
DEHA2C03058g Debaryomyces hansenii DEHA2C03058g I
estExt_fgenesh1_pg.C_chr_1.20230 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20230 N
EURHEDRAFT_447990 Aspergillus ruber EURHEDRAFT_447990 I
EURHEDRAFT_460772 Aspergillus ruber EURHEDRAFT_460772 N
e_gw1.00710.51.1 Aspergillus carbonarius e_gw1.00710.51.1 I
fgenesh1_pg.C_chr_6.1000096 Pichia stipitis fgenesh1_pg.C_chr_6.1000096 I
FGRRES_16927 Fusarium graminearum FGRRES_16927 N
FPSE_04457 Fusarium pseudograminearum FPSE_04457 N
G210_5732 Candida maltosa G210_5732 I
GNLVRS01_PISO0I18070g Millerozyma farinosa GNLVRS01_PISO0I18070g N
GNLVRS01_PISO0J19831g Millerozyma farinosa GNLVRS01_PISO0J19831g N
HMPREF1624_01132 Sporothrix schenckii HMPREF1624_01132 I
HPODL_02161 Ogataea parapolymorpha HPODL_02161 I
M438DRAFT_344531 Aureobasidium pullulans M438DRAFT_344531 I
NFIA_074150 Neosartorya fischeri CADNFIAG00007185 I
PAN0_005c2519 Pseudozyma antarctica PAN0_005c2519 N
PGUG_05832 Meyerozyma guilliermondii PGUG_05832 I
PHSY_000986 Pseudozyma hubeiensis PHSY_000986 N
PICST_32615 Scheffersomyces stipitis PICST_32615 I
PICST_66647 Scheffersomyces stipitis PICST_66647 N
PSEUBRA_SCAF5g02278 Pseudozyma brasiliensis PSEUBRA_SCAF5g02278 N
PV10_03721 Exophiala mesophila PV10_03721 N
PVAR5_1869 Byssochlamys spectabilis PVAR5_1869 N
PVAR5_2678 Byssochlamys spectabilis PVAR5_2678 N
SAPIO_CDS4479 Scedosporium apiospermum SAPIO_CDS4479 I
SPAPADRAFT_61489 Spathaspora passalidarum SPAPADRAFT_61489 I
sr13818 Sporisorium reilianum sr13818 N
TRIVIDRAFT_68874 Trichoderma virens TRIVIDRAFT_68874 N
UM02765 Ustilago maydis UM02765 N
V565_080510 Rhizoctonia solani V565_080510 N
Z517_07459 Fonsecaea pedrosoi Z517_07459 N
Z518_00888 Rhinocladiella mackenziei Z518_00888 N
Z518_09601 Rhinocladiella mackenziei Z518_09601 N
ZBAI_02843 Zygosaccharomyces bailii ZBAI_02843 I
ZBAI_09101 Zygosaccharomyces bailii ZBAI_09101 I
ZYRO0G12584g Zygosaccharomyces rouxii ZYRO0G12584g N