PRDM4 (Gallus gallus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGALG00000012619 T095918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.821 0.978
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.821 0.978
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.821 0.978
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.821 0.978
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000020571 C2H2 ZF 592 614
ENSGALP00000020571 C2H2 ZF 620 642
ENSGALP00000020571 C2H2 ZF 648 670
ENSGALP00000020571 C2H2 ZF 676 698
ENSGALP00000020571 C2H2 ZF 704 726
ENSGALP00000020571 C2H2 ZF 732 753

Links

Other C2H2 ZF family TFs
Other Gallus gallus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002107 Calypte anna Aan_R002107 I 0.000
Aan_R011089 Calypte anna Aan_R011089 N 0.000
ACYPI37104 Acyrthosiphon pisum ACYPI37104 N 0.000
CapteG70345 Capitella teleta CapteG70345 N 0.000
Cmyd_10012142 Chelonia mydas Cmyd_10012142 I 0.000
Cmyd_10017645 Chelonia mydas Cmyd_10017645 I 0.000
CPIJ009873 Culex quinquefasciatus CPIJ009873 I 0.000
CpipJ_CPIJ009873 Culex pipiens CpipJ_CPIJ009873 I 0.000
DME_0000750701 Dracunculus medinensis DME_0000750701 N 0.000
ENSAMEG00000015618 Ailuropoda melanoleuca ENSAMEG00000015618 I 0.000
ENSAMEG00000017891 Ailuropoda melanoleuca ENSAMEG00000017891 I 0.000
ENSAMEG00000019033 Ailuropoda melanoleuca ENSAMEG00000019033 I 0.000
ENSAMXG00000024953 Astyanax mexicanus ENSAMXG00000024953 N 0.000
ENSCPOG00000004662 Cavia porcellus ENSCPOG00000004662 I 0.000
ENSCSAG00000000399 Chlorocebus sabaeus ENSCSAG00000000399 I 0.000
ENSCSAG00000000502 Chlorocebus sabaeus ENSCSAG00000000502 I 0.000
ENSCSAG00000018431 Chlorocebus sabaeus ENSCSAG00000018431 I 0.000
ENSCSAVG00000003501 Ciona savignyi ENSCSAVG00000003501 N 0.000
ENSGMOG00000005169 Gadus morhua ENSGMOG00000005169 N 0.000
ENSLACG00000002633 Latimeria chalumnae ENSLACG00000002633 I 0.000
ENSLACG00000010446 Latimeria chalumnae ENSLACG00000010446 I 0.000
ENSLACG00000010664 Latimeria chalumnae ENSLACG00000010664 I 0.000
ENSLOCG00000011531 Lepisosteus oculatus ENSLOCG00000011531 I 0.000
ENSLOCG00000011560 Lepisosteus oculatus ENSLOCG00000011560 N 0.000
ENSMEUG00000001133 Macropus eugenii ENSMEUG00000001133 I 0.000
ENSMEUG00000016604 Macropus eugenii ENSMEUG00000016604 I 0.000
ENSMODG00000014458 Monodelphis domestica ENSMODG00000014458 I 0.000
ENSMPUG00000019178 Mustela putorius furo ENSMPUG00000019178 I 0.000
ENSMPUG00000019699 Mustela putorius furo ENSMPUG00000019699 I 0.000
ENSMPUG00000019792 Mustela putorius furo ENSMPUG00000019792 I 0.000
ENSNLEG00000016424 Nomascus leucogenys ENSNLEG00000016424 I 0.000
ENSNLEG00000018460 Nomascus leucogenys ENSNLEG00000018460 I 0.000
ENSOARG00000000293 Ovis aries ENSOARG00000000293 I 0.000
ENSOARG00000005615 Ovis aries ENSOARG00000005615 I 0.000
ENSONIG00000021289 Oreochromis niloticus ENSONIG00000021289 N 0.000
ENSP00000242462 Macaca fascicularis ENSP00000242462 I 0.000
ENSP00000242462-D1 Bos grunniens ENSP00000242462-D1 I 0.000
ENSP00000317333-D1 Bos grunniens ENSP00000317333-D1 I 0.000
ENSP00000317580 Macaca fascicularis ENSP00000317580 I 0.000
ENSPANG00000003722 Papio anubis ENSPANG00000003722 I 0.000
ENSPANG00000004163 Papio anubis ENSPANG00000004163 I 0.000
ENSPANG00000004407 Papio anubis ENSPANG00000004407 I 0.000
ENSPFOG00000019983 Poecilia formosa ENSPFOG00000019983 N 0.000
ENSPMAG00000006182 Petromyzon marinus ENSPMAG00000006182 I 0.000
ENSPPYG00000002380 Pongo abelii ENSPPYG00000002380 I 0.000
ENSPPYG00000015008 Pongo abelii ENSPPYG00000015008 I 0.000
ENSPPYG00000015801 Pongo abelii ENSPPYG00000015801 I 0.000
ENSPSIG00000001125 Pelodiscus sinensis ENSPSIG00000001125 I 0.000
ENSSHAG00000002586 Sarcophilus harrisii ENSSHAG00000002586 I 0.000
ENSSHAG00000006703 Sarcophilus harrisii ENSSHAG00000006703 I 0.000
ENSSTOG00000011758 Ictidomys tridecemlineatus ENSSTOG00000011758 I 0.000
ENSSTOG00000022759 Ictidomys tridecemlineatus ENSSTOG00000022759 I 0.000
ENSSTOG00000026959 Ictidomys tridecemlineatus ENSSTOG00000026959 I 0.000
ENSTGUG00000001245 Taeniopygia guttata ENSTGUG00000001245 N 0.000
ENSTSYG00000001849 Tarsius syrichta ENSTSYG00000001849 I 0.000
ENSTSYG00000006329 Tarsius syrichta ENSTSYG00000006329 I 0.000
estExt_fgenesh2_kg.C_7600001 Branchiostoma floridae estExt_fgenesh2_kg.C_7600001 I 0.000
estExt_fgenesh2_pg.C_90049 Branchiostoma floridae estExt_fgenesh2_pg.C_90049 I 0.000
ISCW020498 Ixodes scapularis ISCW020498 I 0.000
Myotis_brandtii_Cxcl14_10032619 Myotis brandtii Myotis_brandtii_Cxcl14_10032619 I 0.000
NEUROG1 Anolis carolinensis ENSACAG00000001255 I 0.000
NEUROG1 Bos taurus ENSBTAG00000003331 I 0.000
NEUROG1 Canis familiaris ENSCAFG00000001083 I 0.000
NEUROG1 Callithrix jacchus ENSCJAG00000005899 I 0.000
NEUROG1 Cavia porcellus ENSCPOG00000020630 I 0.000
neurog1 Danio rerio ENSDARG00000056130 N 0.000
NEUROG1 Dasypus novemcinctus ENSDNOG00000018026 I 0.000
NEUROG1 Homo sapiens ENSG00000181965 D 0.000
NEUROG1 Gorilla gorilla ENSGGOG00000002841 I 0.000
NEUROG1 Loxodonta africana ENSLAFG00000010799 I 0.000
NEUROG1 Myotis lucifugus ENSMLUG00000004571 I 0.000
NEUROG1 Macaca mulatta ENSMMUG00000004770 I 0.000
Neurog1 Mus musculus ENSMUSG00000048904 D 0.000
NEUROG1 Oryctolagus cuniculus ENSOCUG00000004405 I 0.000
NEUROG1 Otolemur garnettii ENSOGAG00000033152 I 0.000
neurog1 Oryzias latipes ENSORLG00000020531 N 0.000
NEUROG1 Pan troglodytes ENSPTRG00000017258 I 0.000
Neurog1 Rattus norvegicus ENSRNOG00000022405 I 0.000
NEUROG1 Sus scrofa ENSSSCG00000014309 I 0.000
neurog1 Takifugu rubripes ENSTRUG00000000532 N 0.000
NEUROG2 Anolis carolinensis ENSACAG00000023148 N 0.000
NEUROG2 Bos taurus ENSBTAG00000015259 I 0.000
NEUROG2 Canis familiaris ENSCAFG00000025325 I 0.000
NEUROG2 Choloepus hoffmanni ENSCHOG00000000513 I 0.000
NEUROG2 Callithrix jacchus ENSCJAG00000003772 I 0.000
NEUROG2 Dasypus novemcinctus ENSDNOG00000010840 I 0.000
NEUROG2 Felis catus ENSFCAG00000010711 I 0.000
NEUROG2 Homo sapiens ENSG00000178403 D 0.000
NEUROG2 Gorilla gorilla ENSGGOG00000017054 I 0.000
NEUROG2 Macaca mulatta ENSMMUG00000014078 I 0.000
NEUROG2 Monodelphis domestica ENSMODG00000005712 I 0.000
Neurog2 Mus musculus ENSMUSG00000027967 D 0.000
NEUROG2 Oryctolagus cuniculus ENSOCUG00000007063 I 0.000
NEUROG2 Otolemur garnettii ENSOGAG00000029479 I 0.000
NEUROG2 Pan troglodytes ENSPTRG00000016376 I 0.000
Neurog2 Rattus norvegicus ENSRNOG00000010972 I 0.000
NEUROG3 Bos taurus ENSBTAG00000006431 I 0.000
NEUROG3 Canis familiaris ENSCAFG00000023597 I 0.000
NEUROG3 Choloepus hoffmanni ENSCHOG00000004116 I 0.000
NEUROG3 Callithrix jacchus ENSCJAG00000016485 I 0.000
neurog3 Danio rerio ENSDARG00000016951 I 0.000
NEUROG3 Homo sapiens ENSG00000122859 I 0.000
NEUROG3 Gorilla gorilla ENSGGOG00000002752 I 0.000
NEUROG3 Loxodonta africana ENSLAFG00000028187 I 0.000
NEUROG3 Myotis lucifugus ENSMLUG00000024120 I 0.000
NEUROG3 Macaca mulatta ENSMMUG00000008956 I 0.000
NEUROG3 Monodelphis domestica ENSMODG00000012228 I 0.000
Neurog3 Mus musculus ENSMUSG00000044312 I 0.000
NEUROG3 Oryctolagus cuniculus ENSOCUG00000027045 I 0.000
NEUROG3 Otolemur garnettii ENSOGAG00000005928 I 0.000
NEUROG3 Pan troglodytes ENSPTRG00000002576 I 0.000
Neurog3 Rattus norvegicus ENSRNOG00000024413 I 0.000
NEUROG3 Tursiops truncatus ENSTTRG00000008216 I 0.000
neurog3 Xenopus tropicalis XB-GENE-876279 I 0.000
neurog3.S Xenopus laevis XB-GENE-6055069 I 0.000
neurogenin Ciona intestinalis ENSCING00000004039 N 0.000
Ogr11668 Ophisaurus gracilis Ogr11668 I 0.000
Ogr17531 Ophisaurus gracilis Ogr17531 I 0.000
Pvit_00533 Pogona vitticeps Pvit_00533 I 0.000
Pvit_01880 Pogona vitticeps Pvit_01880 I 0.000
SPU_007147 Strongylocentrotus purpuratus SPU_007147 N 0.000
XP_002935814 Xenopus tropicalis XP_002935814 I 0.000