PRDM4 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000001483 T097210_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 0.993
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 0.993
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 0.993
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000001236 C2H2 ZF 593 615
ENSLAFP00000001236 C2H2 ZF 621 643
ENSLAFP00000001236 C2H2 ZF 649 671
ENSLAFP00000001236 C2H2 ZF 677 699
ENSLAFP00000001236 C2H2 ZF 705 727
ENSLAFP00000001236 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PISMIDRAFT_10373 Pisolithus microcarpus PISMIDRAFT_10373 N 0.000
PISMIDRAFT_12864 Pisolithus microcarpus PISMIDRAFT_12864 N 0.000
PISMIDRAFT_13876 Pisolithus microcarpus PISMIDRAFT_13876 N 0.000
PISMIDRAFT_15228 Pisolithus microcarpus PISMIDRAFT_15228 N 0.000
PISMIDRAFT_15999 Pisolithus microcarpus PISMIDRAFT_15999 N 0.000
PISMIDRAFT_17421 Pisolithus microcarpus PISMIDRAFT_17421 N 0.000
PISMIDRAFT_19198 Pisolithus microcarpus PISMIDRAFT_19198 N 0.000
PISMIDRAFT_19250 Pisolithus microcarpus PISMIDRAFT_19250 N 0.000
PISMIDRAFT_19573 Pisolithus microcarpus PISMIDRAFT_19573 N 0.000
PISMIDRAFT_19675 Pisolithus microcarpus PISMIDRAFT_19675 N 0.000
PISMIDRAFT_20118 Pisolithus microcarpus PISMIDRAFT_20118 N 0.000