SCRT2 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000030340 T097492_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.827 0.991
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.827 0.991
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.827 0.991
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.786 0.900
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.786 0.900
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.786 0.900
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.786 0.900
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.774 0.845
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.774 0.845
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.774 0.845
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.774 0.845
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.758 0.809
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.758 0.809
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.758 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000020467 C2H2 ZF 141 163
ENSLAFP00000020467 C2H2 ZF 173 194
ENSLAFP00000020467 C2H2 ZF 198 220
ENSLAFP00000020467 C2H2 ZF 226 248
ENSLAFP00000020467 C2H2 ZF 254 272
ENSLAFP00000026448 C2H2 ZF 155 177
ENSLAFP00000026448 C2H2 ZF 187 208
ENSLAFP00000026448 C2H2 ZF 212 234
ENSLAFP00000026448 C2H2 ZF 240 262
ENSLAFP00000026448 C2H2 ZF 268 286

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_082010 Aspergillus clavatus CADACLAG00007864 I
AFUA_6G10010 Aspergillus fumigatus CADAFUAG00002152 I
ANIA_02122 Aspergillus nidulans CADANIAG00010526 D
CADANGAG00008866 Aspergillus niger CADANGAG00008866 I
CHGG_03691 Chaetomium globosum CHGG_03691 I
CLUG_04669 Candida lusitaniae CLUG_04669 N
CLUG_04669 Clavispora lusitaniae CLUG_04669 N
EURHEDRAFT_415786 Aspergillus ruber EURHEDRAFT_415786 I
e_gw1.00118.151.1 Aspergillus carbonarius e_gw1.00118.151.1 I
NFIA_055780 Neosartorya fischeri CADNFIAG00005300 I
NFIA_072830 Neosartorya fischeri CADNFIAG00008162 N
Pc20g15350 Penicillium chrysogenum Pc20g15350 I
PCH_Pc20g15350 Penicillium rubens PCH_Pc20g15350 I
PFICI_08643 Pestalotiopsis fici PFICI_08643 N