Scrt1 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000048385 T101233_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000094093 C2H2 ZF 191 213
ENSMUSP00000094093 C2H2 ZF 223 244
ENSMUSP00000094093 C2H2 ZF 248 270
ENSMUSP00000094093 C2H2 ZF 276 298
ENSMUSP00000094093 C2H2 ZF 304 325
ENSMUSP00000131152 C2H2 ZF 191 213
ENSMUSP00000131152 C2H2 ZF 223 244
ENSMUSP00000131152 C2H2 ZF 248 270
ENSMUSP00000131152 C2H2 ZF 276 298
ENSMUSP00000131152 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015941 Calypte anna Aan_R015941 N 0.000
Afo_R013743 Aptenodytes forsteri Afo_R013743 N 0.000
Brh_R002873 Buceros rhinoceros Brh_R002873 N 0.000
ENSAMEG00000016451 Ailuropoda melanoleuca ENSAMEG00000016451 N 0.000
ENSAPLG00000015265 Anas platyrhynchos ENSAPLG00000015265 N 0.000
ENSCSAG00000005755 Chlorocebus sabaeus ENSCSAG00000005755 N 0.000
ENSFALG00000003312 Ficedula albicollis ENSFALG00000003312 N 0.000
ENSLACG00000005412 Latimeria chalumnae ENSLACG00000005412 N 0.000
ENSMEUG00000013235 Macropus eugenii ENSMEUG00000013235 N 0.000
ENSMPUG00000000182 Mustela putorius furo ENSMPUG00000000182 N 0.000
ENSNLEG00000007765 Nomascus leucogenys ENSNLEG00000007765 N 0.000
ENSOARG00000017642 Ovis aries ENSOARG00000017642 N 0.000
ENSP00000385006 Macaca fascicularis ENSP00000385006 N 0.000
ENSP00000385006-D1 Bos grunniens ENSP00000385006-D1 N 0.000
ENSPANG00000020992 Papio anubis ENSPANG00000020992 N 0.000
ENSPPYG00000013356 Pongo abelii ENSPPYG00000013356 N 0.000
ENSPSIG00000006771 Pelodiscus sinensis ENSPSIG00000006771 N 0.000
ENSSHAG00000002590 Sarcophilus harrisii ENSSHAG00000002590 N 0.000
ENSSTOG00000015998 Ictidomys tridecemlineatus ENSSTOG00000015998 N 0.000
ENSTSYG00000002410 Tarsius syrichta ENSTSYG00000002410 N 0.000
Gfo_R001811 Geospiza fortis Gfo_R001811 N 0.000
Pvit_12887 Pogona vitticeps Pvit_12887 N 0.000
Thap4 Rattus norvegicus ENSRNOG00000018351 N 0.000
THAP4 Anolis carolinensis ENSACAG00000000876 N 0.000
THAP4 Bos taurus ENSBTAG00000013253 N 0.000
THAP4 Canis familiaris ENSCAFG00000013012 N 0.000
THAP4 Choloepus hoffmanni ENSCHOG00000003231 N 0.000
THAP4 Callithrix jacchus ENSCJAG00000000540 N 0.000
THAP4 Cavia porcellus ENSCPOG00000022107 N 0.000
THAP4 Equus caballus ENSECAG00000000252 N 0.000
THAP4 Tursiops truncatus ENSTTRG00000017281 N 0.000
THAP4 Erinaceus europaeus ENSEEUG00000008009 N 0.000
THAP4 Taeniopygia guttata ENSTGUG00000005955 N 0.000
THAP4 Tupaia belangeri ENSTBEG00000003154 N 0.000
THAP4 Echinops telfairi ENSETEG00000009284 N 0.000
THAP4 Felis catus ENSFCAG00000014280 N 0.000
THAP4 Macaca mulatta ENSMMUG00000005662 N 0.000
THAP4 Pteropus vampyrus ENSPVAG00000016841 N 0.000
THAP4 Homo sapiens ENSG00000176946 N 0.000
THAP4 Gallus gallus ENSGALG00000006283 N 0.000
THAP4 Procavia capensis ENSPCAG00000003695 N 0.000
THAP4 Gorilla gorilla ENSGGOG00000015684 N 0.000
THAP4 Otolemur garnettii ENSOGAG00000024821 N 0.000
THAP4 Oryctolagus cuniculus ENSOCUG00000011164 N 0.000
THAP4 Loxodonta africana ENSLAFG00000018001 N 0.000
THAP4 Ornithorhynchus anatinus ENSOANG00000009842 N 0.000
THAP4 Microcebus murinus ENSMICG00000016452 N 0.000
Thap4 Mus musculus ENSMUSG00000026279 N 0.000
THAP4 Myotis lucifugus ENSMLUG00000007192 N 0.000