CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSOCUG00000026938
(
Oryctolagus cuniculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSOCUG00000026938
T103205_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YY1
M02877_2.00
Homo sapiens
NVSRCCATNDH
DHNATGGYSBN
SELEX
Jolma et al.(2013)
YY1_1
0.827
1.000
YY1
M04406_2.00
Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK
MGCACDNWHNVYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1
0.827
1.000
YY1
M04407_2.00
Homo sapiens
NKMCGCCATYTTGN
NCAARATGGCGKMN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2
0.827
1.000
YY1
M05845_2.00
Homo sapiens
NNNVGCCATNWYD
HRWNATGGCBNNN
SMiLE-seq
Isakova et al.(2017)
YY1
0.827
1.000
YY1
M08288_2.00
Homo sapiens
GCCGCCATBKYB
VRMVATGGCGGC
ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE
0.827
1.000
YY1
M08085_2.00
Homo sapiens
KCVGCCATBTTK
MAAVATGGCBGM
ChIP-seq
Mathelier et al.(2014)
MA0095.2
0.827
1.000
YY1
M07855_2.00
Homo sapiens
VNVGCCGCCATBTTK
MAAVATGGCGGCBNB
ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha
0.827
1.000
YY1
M07856_2.00
Homo sapiens
GCSGCCATBTT
AAVATGGCSGC
ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha
0.827
1.000
YY1
M07857_2.00
Homo sapiens
BSNVGCSGCCATBTT
AAVATGGCSGCBNSV
ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha
0.827
1.000
YY1
M07858_2.00
Homo sapiens
NNVGCSGCCATBTTK
MAAVATGGCSGCBNN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha
0.827
1.000
YY1
M07859_2.00
Homo sapiens
SBSGCSGCCATBTTK
MAAVATGGCSGCSVS
ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD
0.827
1.000
YY1
M07860_2.00
Homo sapiens
GCCGCCATBTTKNNN
NNNMAAVATGGCGGC
ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha
0.827
1.000
YY1
M07861_2.00
Homo sapiens
VGCSGCCATBTTK
MAAVATGGCSGCB
ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD
0.827
1.000
YY1
M08237_2.00
Homo sapiens
VNVGCVGCCATBTTD
HAAVATGGCBGCBNB
ChIP-seq
Najafabadi et al.(2015b)
YY1
0.827
1.000
YY1
M08865_2.00
Homo sapiens
GCCGCCATYTTK
MAARATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A
0.827
1.000
Yy1
M08971_2.00
Mus musculus
GCCGCCATBTTB
VAAVATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A
0.827
1.000
YY1
M10138_2.00
Homo sapiens
NVNNDCCATNTWNNVWN
NWBNNWANATGGHNNBN
Transfac
Matys et al.(2006)
V$YY1_01
0.827
1.000
YY1
M10139_2.00
Homo sapiens
NNNSBGCCATCTDSNHTSND
HNSADNSHAGATGGCVSNNN
Transfac
Matys et al.(2006)
V$YY1_02
0.827
1.000
YY1
M10140_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_03
0.827
1.000
YY1
M10141_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_07
0.827
1.000
YY1
M10142_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_08
0.827
1.000
YY1
M10143_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q4_01
0.827
1.000
YY1
M10144_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_02
0.827
1.000
YY1
M10145_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_03
0.827
1.000
YY1
M10146_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6
0.827
1.000
YY1
M04408_2.00
Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY
RGCACDWWHHGYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1
0.827
1.000
YY1
M04409_2.00
Homo sapiens
RKCSGCCATYTTGD
HCAARATGGCSGMY
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2
0.827
1.000
TYY2_RAT
M10385_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY2
0.816
0.912
pho
M06053_2.00
Drosophila melanogaster
KNVGCCATDAHNSY
RSNDTHATGGCBNM
B1H
Zhu et al.(2011)
pho_FlyReg_FBgn0002521
0.809
0.945
pho
M06054_2.00
Drosophila melanogaster
KCCGCCATHWTK
MAWDATGGCGGM
B1H
Zhu et al.(2011)
pho_SANGER_10_FBgn0002521
0.809
0.945
pho
M06055_2.00
Drosophila melanogaster
NKBCGCCATHWTKNN
NNMAWDATGGCGVMN
B1H
Zhu et al.(2011)
pho_SOLEXA_5_FBgn0002521
0.809
0.945
phol
M06144_2.00
Drosophila melanogaster
CGCCATHTTK
MAADATGGCG
B1H
Zhu et al.(2011)
phol_SANGER_5_FBgn0035997
0.767
0.835
phol
M06145_2.00
Drosophila melanogaster
NKNCGCCATNTTKNN
NNMAANATGGCGNMN
B1H
Zhu et al.(2011)
phol_SOLEXA_5_FBgn0035997
0.767
0.835
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000019701
C2H2 ZF
115
138
ACPHKGCTKMFRDNSAMRKHLHTH
ENSOCUP00000019701
C2H2 ZF
143
165
HVCAECGKAFVESSKLKRHQLVH
ENSOCUP00000019701
C2H2 ZF
171
195
FQCTFEGCGKRFSLDFNLRTHVRIH
ENSOCUP00000019701
C2H2 ZF
201
225
YVCPFDGCNKKFAQSTNLKSHILTH
Links
Other
C2H2 ZF
family TFs
Other
Oryctolagus cuniculus
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy