gfi1aa (Oryzias latipes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSORLG00000005060 T104768_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.801 0.942
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.801 0.942
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.801 0.942
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.801 0.942
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.801 0.942
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.801 0.942
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.801 0.942
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.801 0.942
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.799 0.935
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.768 0.862
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.768 0.862
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.768 0.862
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.768 0.862
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.768 0.862
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.768 0.862
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.766 0.855
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.766 0.855
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.766 0.855
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.765 0.848
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.764 0.935
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.758 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006377 C2H2 ZF 255 278
ENSORLP00000006377 C2H2 ZF 284 306
ENSORLP00000006377 C2H2 ZF 312 334
ENSORLP00000006377 C2H2 ZF 340 362
ENSORLP00000006377 C2H2 ZF 368 390
ENSORLP00000006377 C2H2 ZF 396 419

Links

Other C2H2 ZF family TFs
Other Oryzias latipes TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_04123 Aspergillus nidulans CADANIAG00004553 N
CGGC5_5698 Colletotrichum gloeosporioides CGGC5_5698 N
Cob_01455 Colletotrichum orbiculare Cob_01455 N
COCC4DRAFT_203966 Bipolaris maydis COCC4DRAFT_203966 N
COCCADRAFT_103070 Bipolaris zeicola COCCADRAFT_103070 N
COCMIDRAFT_108257 Bipolaris oryzae COCMIDRAFT_108257 N
COCSADRAFT_33801 Bipolaris sorokiniana COCSADRAFT_33801 N
COCVIDRAFT_110225 Bipolaris victoriae COCVIDRAFT_110225 N
estExt_Genewise1Plus.C_260021 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_260021 N
FFUJ_09328 Fusarium fujikuroi FFUJ_09328 N
fgenesh1_pm.sca_33_chr6_1_0000053 Nectria haematococca fgenesh1_pm.sca_33_chr6_1_0000053 N
FGRRES_03912 Fusarium graminearum FGRRES_03912 N
FOXG_11743 Fusarium oxysporum FOXG_11743 N
FPSE_05364 Fusarium pseudograminearum FPSE_05364 N
FVEG_10069 Fusarium verticillioides FVEG_10069 N
MGG_15021 Magnaporthe oryzae MGG_15021 N
NechaG94027 Fusarium solani NechaG94027 N
PFICI_10851 Pestalotiopsis fici PFICI_10851 N
PVAR5_4503 Byssochlamys spectabilis PVAR5_4503 N
SAPIO_CDS7978 Scedosporium apiospermum SAPIO_CDS7978 N
SETTUDRAFT_147291 Setosphaeria turcica SETTUDRAFT_147291 N
V499_02546 Pseudogymnoascus pannorum V499_02546 N