Znf354b (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000029678 T109166_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF354B
M07653_2.00 		Homo sapiens
RDWTAKYYCMTT
AAKGRRMTAWHY		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF354B.RCADE.ReprocessedData 		0.776 0.943
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000004902 C2H2 ZF 145 167
ENSRNOP00000004902 C2H2 ZF 173 195
ENSRNOP00000004902 C2H2 ZF 201 223
ENSRNOP00000004902 C2H2 ZF 229 251
ENSRNOP00000004902 C2H2 ZF 282 304
ENSRNOP00000004902 C2H2 ZF 310 332
ENSRNOP00000004902 C2H2 ZF 338 360
ENSRNOP00000004902 C2H2 ZF 366 388
ENSRNOP00000004902 C2H2 ZF 394 416
ENSRNOP00000004902 C2H2 ZF 422 444
ENSRNOP00000004902 C2H2 ZF 450 472
ENSRNOP00000004902 C2H2 ZF 478 500
ENSRNOP00000004902 C2H2 ZF 506 528

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.000
ARF2 Arabidopsis thaliana AT5G62000 D 0.000
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.000
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.000
ARF4 Oryza sativa OS01G0927600 I 0.000
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.000
Bo2g161810 Brassica oleracea Bo2g161810 I 0.000
Bo3g108130 Brassica oleracea Bo3g108130 I 0.000
Bo9g014770 Brassica oleracea Bo9g014770 I 0.000
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.000
Bra010048 Brassica rapa Bra010048 I 0.000
Bra029293 Brassica rapa Bra029293 I 0.000
Bra035910 Brassica rapa Bra035910 I 0.000
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.000
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.000
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.000
Ca_05681 Cicer arietinum Ca_05681 I 0.000
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.000
Cla019614 Citrullus lanatus Cla019614 I 0.000
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.000
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.000
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.000
F775_31280 Aegilops tauschii F775_31280 I 0.000
F775_32662 Aegilops tauschii F775_32662 I 0.000
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.000
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.000
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.000
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.000
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.000
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.000
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.000
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.000
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.000
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.000
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.000
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.000
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.000
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.000
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.000
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.000
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.000
MDP0000258032 Malus domestica MDP0000258032 I 0.000
MDP0000310875 Malus domestica MDP0000310875 I 0.000
mgf006511m Mimulus guttatus mgf006511m I 0.000
mgf015308m Mimulus guttatus mgf015308m I 0.000
mgf020855m Mimulus guttatus mgf020855m I 0.000
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.000
OB12G20020 Oryza brachyantha OB12G20020 I 0.000
OBART01G42570 Oryza barthii OBART01G42570 I 0.000
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.000
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.000
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.000
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.000
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.000
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.000
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.000
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.000
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.000
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.000
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.000
PK16974.1 Cannabis sativa PK16974.1 I 0.000
Pm024588 Prunus mume Pm024588 I 0.000
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.000
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.000
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.000
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.000
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.000
Si000340m.g Setaria italica Si000340m.g I 0.000
Si021216m.g Setaria italica Si021216m.g I 0.000
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.000
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.000
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.000
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.000
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.000
VIT_07s0104g01230 Vitis vinifera VIT_07s0104g01230 I 0.000