snai1a (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000012293 T112400_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.779 0.857
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.779 0.857
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.779 0.846
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.779 0.846
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.779 0.846
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.779 0.846
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.779 0.846
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.779 0.846
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.779 0.846
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.779 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000031136 C2H2 ZF 148 170
ENSTRUP00000031136 C2H2 ZF 174 196
ENSTRUP00000031136 C2H2 ZF 202 224
ENSTRUP00000031136 C2H2 ZF 230 251
ENSTRUP00000031137 C2H2 ZF 151 173
ENSTRUP00000031137 C2H2 ZF 177 199
ENSTRUP00000031137 C2H2 ZF 205 227
ENSTRUP00000031137 C2H2 ZF 233 254

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400037921 Solanum tuberosum PGSC0003DMG400037921 N
PGSC0003DMG400040550 Solanum tuberosum PGSC0003DMG400040550 N
PGSC0003DMG400045571 Solanum tuberosum PGSC0003DMG400045571 N
PGSC0003DMG400045663 Solanum tuberosum PGSC0003DMG400045663 N
PGSC0003DMG400046943 Solanum tuberosum PGSC0003DMG400046943 N
PGSC0003DMG400047167 Solanum tuberosum PGSC0003DMG400047167 N
Solyc03g059300.1 Solanum lycopersicum Solyc03g059300.1 N
Solyc03g062670.1 Solanum lycopersicum Solyc03g062670.1 N
Solyc03g062750.1 Solanum lycopersicum Solyc03g062750.1 N
Solyc03g114260.1 Solanum lycopersicum Solyc03g114260.1 N