PRDM4 (Tursiops truncatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTTRG00000011056 T113221_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 1.000
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 1.000
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000010481 C2H2 ZF 590 612
ENSTTRP00000010481 C2H2 ZF 618 640
ENSTTRP00000010481 C2H2 ZF 646 668
ENSTTRP00000010481 C2H2 ZF 674 696
ENSTTRP00000010481 C2H2 ZF 702 724
ENSTTRP00000010481 C2H2 ZF 730 751

Links

Other C2H2 ZF family TFs
Other Tursiops truncatus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PaG_03936 Pseudozyma aphidis PaG_03936 N
PAN0_009c3772 Pseudozyma antarctica PAN0_009c3772 N
PHSY_001337 Pseudozyma hubeiensis PHSY_001337 N
PSEUBRA_SCAF10g05513 Pseudozyma brasiliensis PSEUBRA_SCAF10g05513 N
UHOR_05421 Ustilago hordei UHOR_05421 N
UM03525 Ustilago maydis UM03525 I