sna (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0003448 T114408_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sna
M03670_2.00		 Drosophila melanogaster
TRCACCTGTYVB
VBRACAGGTGYA		 SELEX
Nitta et al.(2015)
sna_1		 (Direct) (Direct)
sna
M05862_2.00		 Drosophila melanogaster
NNVCACCTGTYNN
NNRACAGGTGBNN		 SMiLE-seq
Isakova et al.(2017)
Sna		 (Direct) (Direct)
sna
M06069_2.00		 Drosophila melanogaster
SMACYTGYBN
NVRCARGTKS		 B1H
Zhu et al.(2011)
sna_FlyReg_FBgn0003448		 (Direct) (Direct)
sna
M06070_2.00		 Drosophila melanogaster
SCACCTGWYV
BRWCAGGTGS		 B1H
Zhu et al.(2011)
sna_SANGER_10_FBgn0003448		 (Direct) (Direct)
sna
M06071_2.00		 Drosophila melanogaster
MCACCTGTYVHNNN
NNNDBRACAGGTGK		 B1H
Zhu et al.(2011)
sna_SOLEXA_5_FBgn0003448		 (Direct) (Direct)
sna
M09664_2.00		 Drosophila melanogaster
VMACCTGYB
VRCAGGTKB		 Misc
Kulakovskiy et al.(2009)
sna		 (Direct) (Direct)
sna
M10375_2.00		 Drosophila melanogaster
NKRCACCTGTYNB
VNRACAGGTGYMN		 Transfac
Matys et al.(2006)
I$SN_01		 (Direct) (Direct)
sna
M10376_2.00		 Drosophila melanogaster
WSBHADCAVSTKSK
MSMASBTGHTDVSW		 Transfac
Matys et al.(2006)
I$SN_02		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0080298 C2H2 ZF 245 267
FBpp0080298 C2H2 ZF 280 302
FBpp0080298 C2H2 ZF 306 328
FBpp0080298 C2H2 ZF 334 356
FBpp0080298 C2H2 ZF 362 383

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29994.m000464 Ricinus communis 29994.m000464 N
AMTR_s00011p00256770 Amborella trichopoda AMTR_s00011p00256770 N
Aquca_030_00311 Aquilegia coerulea Aquca_030_00311 N
BGIOSGA029268 Oryza indica BGIOSGA029268 N
BRADI4G38000 Brachypodium distachyon BRADI4G38000 N
cassava20557.m1 Manihot esculenta cassava20557.m1 N
chr4.CM0042.1850.nd Lotus japonicus chr4.CM0042.1850.nd N
Ciclev10015448m.g Citrus clementina Ciclev10015448m.g N
Cla010033 Citrullus lanatus Cla010033 N
Cucsa.048660 Cucumis sativus Cucsa.048660 N
evm.TU.supercontig_30.114 Carica papaya evm.TU.supercontig_30.114 N
F775_19799 Aegilops tauschii F775_19799 N
gene19969-v1.0-hybrid Fragaria vesca gene19969-v1.0-hybrid N
GLYMA05G34280 Glycine max GLYMA05G34280 N
GLYMA08G05390 Glycine max GLYMA08G05390 N
Gorai.008G050900 Gossypium raimondii Gorai.008G050900 N
GSMUA_Achr10G20960_001 Musa acuminata GSMUA_Achr10G20960_001 N
GSMUA_Achr11G13680_001 Musa acuminata GSMUA_Achr11G13680_001 N
GSMUA_Achr11G18180_001 Musa acuminata GSMUA_Achr11G18180_001 N
LPERR09G15520 Leersia perrieri LPERR09G15520 N
Lus10036234.g Linum usitatissimum Lus10036234.g N
Lus10038373.g Linum usitatissimum Lus10038373.g N
mgf011479m Mimulus guttatus mgf011479m N
mgf015174m Mimulus guttatus mgf015174m N
mgf015709m Mimulus guttatus mgf015709m N
MLOC_57580 Hordeum vulgare MLOC_57580 N
OB09G26240 Oryza brachyantha OB09G26240 N
OBART09G19610 Oryza barthii OBART09G19610 N
ONIVA09G20740 Oryza nivara ONIVA09G20740 N
orange1.1g015397m.g Citrus sinensis orange1.1g015397m.g N
ORGLA09G0158300 Oryza glaberrima ORGLA09G0158300 N
ORUFI10G16430 Oryza rufipogon ORUFI10G16430 N
OS09G0560900 Oryza sativa OS09G0560900 N
PGSC0003DMG401017733 Solanum tuberosum PGSC0003DMG401017733 N
Pm010813 Prunus mume Pm010813 N
POPTR_0001s16080 Populus trichocarpa POPTR_0001s16080 N
POPTR_0003s07180 Populus trichocarpa POPTR_0003s07180 N
SapurV1A.0104s0210 Salix purpurea SapurV1A.0104s0210 N
SapurV1A.0273s0180 Salix purpurea SapurV1A.0273s0180 N
SapurV1A.3784s0010 Salix purpurea SapurV1A.3784s0010 N
Solyc02g081620.2 Solanum lycopersicum Solyc02g081620.2 N
SUF4 Vitis vinifera VIT_01s0011g01240 N
TCM_005999 Theobroma cacao TCM_005999 N
Traes_5BL_6688D6ECE Triticum aestivum Traes_5BL_6688D6ECE N
TRIUR3_07451 Triticum urartu TRIUR3_07451 N