GIS2 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh2_kg.6__609__AT5G06650.1 T117372_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__609__AT5G06650.1 C2H2 ZF 55 77

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001588 Ricinus communis 30055.m001588 N
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N
BGIOSGA004848 Oryza indica BGIOSGA004848 N
BGIOSGA037019 Oryza indica BGIOSGA037019 N
Bo3g016870 Brassica oleracea Bo3g016870 N
Bo9g148540 Brassica oleracea Bo9g148540 N
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N
Bra002408 Brassica rapa Bra002408 N
BRADI2G55780 Brachypodium distachyon BRADI2G55780 N
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N
Carubv10001788m.g Capsella rubella Carubv10001788m.g N
cassava14235.m1 Manihot esculenta cassava14235.m1 N
cassava32867.m1 Manihot esculenta cassava32867.m1 N
Ciclev10029032m.g Citrus clementina Ciclev10029032m.g N
Cla018691 Citrullus lanatus Cla018691 N
Cucsa.083530 Cucumis sativus Cucsa.083530 N
evm.TU.supercontig_195.14 Carica papaya evm.TU.supercontig_195.14 N
F775_19761 Aegilops tauschii F775_19761 N
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N
GRMZM2G465835 Zea mays GRMZM2G465835 N
GRMZM5G832473 Zea mays GRMZM5G832473 N
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N
LPERR01G32790 Leersia perrieri LPERR01G32790 N
LPERR05G14390 Leersia perrieri LPERR05G14390 N
LPERR11G02950 Leersia perrieri LPERR11G02950 N
Lus10004846.g Linum usitatissimum Lus10004846.g N
Lus10020643.g Linum usitatissimum Lus10020643.g N
MDP0000130797 Malus domestica MDP0000130797 N
MDP0000759504 Malus domestica MDP0000759504 N
MLOC_7757 Hordeum vulgare MLOC_7757 N
MTR_7g105170 Medicago truncatula MTR_7g105170 N
NAC090 Arabidopsis thaliana AT5G22380 N
OB12G13350 Oryza brachyantha OB12G13350 N
OBART01G38190 Oryza barthii OBART01G38190 N
OBART12G03440 Oryza barthii OBART12G03440 N
OGLUM01G42380 Oryza glumaepatula OGLUM01G42380 N
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N
OMERI01G35090 Oryza meridionalis OMERI01G35090 N
ONIVA01G42870 Oryza nivara ONIVA01G42870 N
ONIVA12G03060 Oryza nivara ONIVA12G03060 N
OPUNC01G36980 Oryza punctata OPUNC01G36980 N
OPUNC05G16010 Oryza punctata OPUNC05G16010 N
OPUNC12G03240 Oryza punctata OPUNC12G03240 N
orange1.1g023996m.g Citrus sinensis orange1.1g023996m.g N
ORGLA01G0320200 Oryza glaberrima ORGLA01G0320200 N
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N
ORUFI01G41540 Oryza rufipogon ORUFI01G41540 N
OS01G0862800 Oryza sativa OS01G0862800 N
OS12G0156100 Oryza sativa OS12G0156100 N
Pavir.Ea03745 Panicum virgatum Pavir.Ea03745 N
Pavir.J02276 Panicum virgatum Pavir.J02276 N
Pavir.J04751 Panicum virgatum Pavir.J04751 N
Pavir.J36282 Panicum virgatum Pavir.J36282 N
Pm001403 Prunus mume Pm001403 N
PRUPE_ppa010337mg Prunus persica PRUPE_ppa010337mg N
Sb03g040720 Sorghum bicolor Sb03g040720 N
Sb09g021780 Sorghum bicolor Sb09g021780 N
Si002586m.g Setaria italica Si002586m.g N
Si022966m.g Setaria italica Si022966m.g N
Si026707m.g Setaria italica Si026707m.g N
TCM_041364 Theobroma cacao TCM_041364 N
TRAES3BF019300010CFD_g Triticum aestivum TRAES3BF019300010CFD_g N
Traes_1AL_179FC28F2 Triticum aestivum Traes_1AL_179FC28F2 N
Traes_1AL_C76BCC7EC Triticum aestivum Traes_1AL_C76BCC7EC N
TRIUR3_34272 Triticum urartu TRIUR3_34272 N