CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MESCA009141
(
Megaselia scalaris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
MESCA009141
T123252_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
odd
M03667_2.00
Drosophila melanogaster
WGCTACCGGTAGCH
DGCTACCGGTAGCW
SELEX
Nitta et al.(2015)
odd_1
0.770
0.902
odd
M06467_2.00
Drosophila melanogaster
BTGCTACTGKD
HMCAGTAGCAV
B1H
Mathelier et al.(2014)
MA0454.1
0.770
0.902
odd
M06058_2.00
Drosophila melanogaster
BTGCTACTGKD
HMCAGTAGCAV
B1H
Zhu et al.(2011)
odd_NAR_FBgn0002985
0.770
0.902
odd
M06059_2.00
Drosophila melanogaster
GCTWCYGDW
WHCRGWAGC
B1H
Zhu et al.(2011)
odd_NBT_1.5_FBgn0002985
0.770
0.902
odd
M06060_2.00
Drosophila melanogaster
GCTACYGKD
HMCRGTAGC
B1H
Zhu et al.(2011)
odd_NBT_2.5_FBgn0002985
0.770
0.902
odd
M06061_2.00
Drosophila melanogaster
GCTACTGKD
HMCAGTAGC
B1H
Zhu et al.(2011)
odd_NBT_5_FBgn0002985
0.770
0.902
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MESCA009141-PA
C2H2 ZF
30
52
FICKFCKRQFTKSYNLLIHERTH
MESCA009141-PA
C2H2 ZF
58
80
YPCDICGKAFRRQDHLRDHRYIH
MESCA009141-PA
C2H2 ZF
86
108
FKCTDCGKGFCQSRTLAVHKVTH
MESCA009141-PA
C2H2 ZF
114
136
HKCPICNRTFNQRANLKAHMQQH
Links
Other
C2H2 ZF
family TFs
Other
Megaselia scalaris
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA003306
Oryza indica
BGIOSGA003306
I
cassava7885.valid.m1
Manihot esculenta
cassava7885.valid.m1
I
cassava7886.valid.m1
Manihot esculenta
cassava7886.valid.m1
I
GRMZM2G092694
Zea mays
GRMZM2G092694
I
MTR_5g044695
Medicago truncatula
MTR_5g044695
I
MTR_6g038890
Medicago truncatula
MTR_6g038890
I
OB05G12510
Oryza brachyantha
OB05G12510
I
OGLUM01G13550
Oryza glumaepatula
OGLUM01G13550
I
OLONG_008759
Oryza longistaminata
OLONG_008759
I
OLONG_024169
Oryza longistaminata
OLONG_024169
I
Pavir.Ea01024
Panicum virgatum
Pavir.Ea01024
I
PDK_20s1387052g001
Phoenix dactylifera
PDK_20s1387052g001
I
PGSC0003DMG400016441
Solanum tuberosum
PGSC0003DMG400016441
I
PGSC0003DMG400022063
Solanum tuberosum
PGSC0003DMG400022063
I