MLOC_10987 (Hordeum vulgare)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MLOC_10987 T123567_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.929
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.929
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_10987.1 C2H2 ZF 356 378
MLOC_10987.1 C2H2 ZF 379 404

Links

Other C2H2 ZF family TFs
Other Hordeum vulgare TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g014660 Brassica oleracea Bo9g014660 I 0.000
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.000
Bra028690 Brassica rapa Bra028690 I 0.000
Bra035919 Brassica rapa Bra035919 I 0.000
cassava4507.m1 Manihot esculenta cassava4507.m1 I 0.000
chr5.CM0909.360.nc Lotus japonicus chr5.CM0909.360.nc I 0.000
Ciclev10024298m.g Citrus clementina Ciclev10024298m.g N 0.000
Cla003678 Citrullus lanatus Cla003678 I 0.000
Cla021384 Citrullus lanatus Cla021384 I 0.000
Cucsa.129330 Cucumis sativus Cucsa.129330 I 0.000
gene21167-v1.0-hybrid Fragaria vesca gene21167-v1.0-hybrid I 0.000
GLYMA10G33810 Glycine max GLYMA10G33810 I 0.000
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.000
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.000
GSMUA_Achr1G00490_001 Musa acuminata GSMUA_Achr1G00490_001 I 0.000
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.000
MDP0000180950 Malus domestica MDP0000180950 I 0.000
mgf021756m Mimulus guttatus mgf021756m I 0.000
mgf025885m Mimulus guttatus mgf025885m I 0.000
orange1.1g045684m.g Citrus sinensis orange1.1g045684m.g N 0.000
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.000
PGSC0003DMG400025989 Solanum tuberosum PGSC0003DMG400025989 N 0.000
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.000
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.000
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I 0.000
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.000
PGSC0003DMG400046672 Solanum tuberosum PGSC0003DMG400046672 N 0.000
PK26398.1 Cannabis sativa PK26398.1 I 0.000
Solyc01g090300.2 Solanum lycopersicum Solyc01g090300.2 I 0.000
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.000
Solyc01g090320.2 Solanum lycopersicum Solyc01g090320.2 N 0.000
Solyc01g090340.2 Solanum lycopersicum Solyc01g090340.2 N 0.000
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.000
Solyc05g050790.1 Solanum lycopersicum Solyc05g050790.1 I 0.000
TCM_005704 Theobroma cacao TCM_005704 I 0.000
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.000
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.000
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.000