PGSC0003DMG400015557 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400015557 T125825_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.809 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.809 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.777 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.761 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400040206 C2H2 ZF 46 68
PGSC0003DMT400040206 C2H2 ZF 89 111

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

369 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAG00000007169 Chlorocebus sabaeus ENSCSAG00000007169 I
ENSMPUG00000019839 Mustela putorius furo ENSMPUG00000019839 I
ENSNLEG00000011204 Nomascus leucogenys ENSNLEG00000011204 I
ENSOARG00000000756 Ovis aries ENSOARG00000000756 I
ENSP00000348673 Macaca fascicularis ENSP00000348673 I
ENSPANG00000025699 Papio anubis ENSPANG00000025699 I
ENSSTOG00000025923 Ictidomys tridecemlineatus ENSSTOG00000025923 I
Myotis_brandtii_ZNF770_10022190 Myotis brandtii Myotis_brandtii_ZNF770_10022190 I
Zfp770 Mus musculus ENSMUSG00000040321 I
Zfp770 Rattus norvegicus ENSRNOG00000043037 I
ZNF770 Monodelphis domestica ENSMODG00000024233 I
ZNF770 Bos taurus ENSBTAG00000040206 I
ZNF770 Loxodonta africana ENSLAFG00000017687 I
ZNF770 Gorilla gorilla ENSGGOG00000027213 I
ZNF770 Oryctolagus cuniculus ENSOCUG00000024670 I
ZNF770 Otolemur garnettii ENSOGAG00000016017 I
ZNF770 Homo sapiens ENSG00000198146 D
ZNF770 Pan troglodytes ENSPTRG00000023628 I
ZNF770 Felis catus ENSFCAG00000024186 I
ZNF770 Sus scrofa ENSSSCG00000004799 I
ZNF770 Equus caballus ENSECAG00000002556 I
ZNF770 Callithrix jacchus ENSCJAG00000021013 I
ZNF770 Canis familiaris ENSCAFG00000029228 I