CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0007s08920
(
Populus trichocarpa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
POPTR_0007s08920
T126814_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G35610
M00859_2.00
Arabidopsis thaliana
NNBHAGCTDNN
NNHAGCTDVNN
PBM
Franco-Zorrilla et al.(2014)
At4g35610
0.757
0.773
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0007s08920.1
C2H2 ZF
142
163
TCSECGRTFASWKAVFGHMRAH
Links
Other
C2H2 ZF
family TFs
Other
Populus trichocarpa
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R008279
Calypte anna
Aan_R008279
I
Afo_R009036
Aptenodytes forsteri
Afo_R009036
I
ANHX
Canis familiaris
ENSCAFG00000005892
I
ANHX
Otolemur garnettii
ENSOGAG00000026442
I
ANHX
Oryctolagus cuniculus
ENSOCUG00000024082
I
ANHX
Macaca mulatta
ENSMMUG00000001259
I
ANHX
Myotis lucifugus
ENSMLUG00000022300
I
ANHX
Gorilla gorilla
ENSGGOG00000024900
I
ANHX
Felis catus
ENSFCAG00000030622
I
ANHX
Dasypus novemcinctus
ENSDNOG00000037821
I
ANHX
Homo sapiens
ENSG00000227059
D
ANHX
Bos taurus
ENSBTAG00000026626
I
Brh_R008652
Buceros rhinoceros
Brh_R008652
I
ENSBTAP00000037738-D1
Bos grunniens
ENSBTAP00000037738-D1
I
ENSCJAG00000002388
Callithrix jacchus
ENSCJAG00000002388
I
ENSCSAG00000001805
Chlorocebus sabaeus
ENSCSAG00000001805
I
ENSFALG00000007397
Ficedula albicollis
ENSFALG00000007397
I
ENSLAFG00000028773
Loxodonta africana
ENSLAFG00000028773
I
ENSOARG00000008922
Ovis aries
ENSOARG00000008922
I
ENSP00000409950
Macaca fascicularis
ENSP00000409950
I
ENSPANG00000016069
Papio anubis
ENSPANG00000016069
I
ENSPSIG00000013281
Pelodiscus sinensis
ENSPSIG00000013281
I
ENSTGUG00000009899
Taeniopygia guttata
ENSTGUG00000009899
I
Gfo_R010890
Geospiza fortis
Gfo_R010890
I
Myotis_brandtii_ceh_10005230
Myotis brandtii
Myotis_brandtii_ceh_10005230
I
Ogr14831
Ophisaurus gracilis
Ogr14831
I
Tal_R010403
Tyto alba
Tal_R010403
I