scaffold_303767.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_303767.1 T128304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.827 0.957
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.825 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_303767.1 C2H2 ZF 245 267

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29739.m003597 Ricinus communis 29739.m003597 N
Bostr.10273s0444 Boechera stricta Bostr.10273s0444 N
Bra008646 Brassica rapa Bra008646 N
Cagra.1995s0004 Capsella grandiflora Cagra.1995s0004 N
Carubv10027922m.g Capsella rubella Carubv10027922m.g N
cassava10114.m1 Manihot esculenta cassava10114.m1 N
Ciclev10010497m.g Citrus clementina Ciclev10010497m.g N
orange1.1g041600m.g Citrus sinensis orange1.1g041600m.g N
SPRG_17213 Saprolegnia parasitica SPRG_17213 N
Thhalv10009656m.g Eutrema salsugineum Thhalv10009656m.g N
Thhalv10013525m.g Eutrema salsugineum Thhalv10013525m.g N