VIT_06s0004g04180 (Vitis vinifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 VIT_06s0004g04180 T131457_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.786 0.804
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.786 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_06s0004g04180.t01 C2H2 ZF 41 63
VIT_06s0004g04180.t01 C2H2 ZF 85 107

Links

Other C2H2 ZF family TFs
Other Vitis vinifera TFs

391 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG016702.1 Alligator sinensis Alligator_sinensis_CCG016702.1 I 0.000
Cmyd_10001850 Chelonia mydas Cmyd_10001850 I 0.000
ENSAMEG00000019741 Ailuropoda melanoleuca ENSAMEG00000019741 I 0.000
ENSBTAP00000022387-D1 Bos grunniens ENSBTAP00000022387-D1 I 0.000
ENSCPOG00000022843 Cavia porcellus ENSCPOG00000022843 I 0.000
ENSCSAG00000019307 Chlorocebus sabaeus ENSCSAG00000019307 I 0.000
ENSMEUG00000002692 Macropus eugenii ENSMEUG00000002692 I 0.000
ENSMICG00000000931 Microcebus murinus ENSMICG00000000931 I 0.000
ENSMPUG00000018787 Mustela putorius furo ENSMPUG00000018787 I 0.000
ENSOARG00000009465 Ovis aries ENSOARG00000009465 I 0.000
ENSP00000372683 Macaca fascicularis ENSP00000372683 I 0.000
ENSPANG00000007019 Papio anubis ENSPANG00000007019 I 0.000
ENSPPYG00000017249 Pongo abelii ENSPPYG00000017249 I 0.000
ENSPSIG00000005781 Pelodiscus sinensis ENSPSIG00000005781 I 0.000
ENSSHAG00000007426 Sarcophilus harrisii ENSSHAG00000007426 I 0.000
ENSSSCG00000001508 Sus scrofa ENSSSCG00000001508 I 0.000
ENSSTOG00000021763 Ictidomys tridecemlineatus ENSSTOG00000021763 I 0.000
Myotis_brandtii_ZBTB22_10004256 Myotis brandtii Myotis_brandtii_ZBTB22_10004256 I 0.000
Pvit_19024 Pogona vitticeps Pvit_19024 I 0.000
zbtb22 Xenopus tropicalis XB-GENE-6458515 I 0.000
Zbtb22 Rattus norvegicus ENSRNOG00000000476 I 0.000
ZBTB22 Pteropus vampyrus ENSPVAG00000001913 I 0.000
ZBTB22 Pan troglodytes ENSPTRG00000018044 I 0.000
ZBTB22 Anolis carolinensis ENSACAG00000008573 I 0.000
ZBTB22 Procavia capensis ENSPCAG00000006256 I 0.000
ZBTB22 Otolemur garnettii ENSOGAG00000033956 I 0.000
Zbtb22 Mus musculus ENSMUSG00000051390 I 0.000
ZBTB22 Macaca mulatta ENSMMUG00000003876 I 0.000
ZBTB22 Myotis lucifugus ENSMLUG00000017554 I 0.000
ZBTB22 Loxodonta africana ENSLAFG00000018510 I 0.000
ZBTB22 Gorilla gorilla ENSGGOG00000006597 I 0.000
ZBTB22 Homo sapiens ENSG00000236104 D 0.000
ZBTB22 Equus caballus ENSECAG00000019536 I 0.000
Zbtb22 Dipodomys ordii ENSDORG00000013837 I 0.000
ZBTB22 Callithrix jacchus ENSCJAG00000021676 I 0.000
ZBTB22 Canis familiaris ENSCAFG00000000977 I 0.000
ZBTB22 Bos taurus ENSBTAG00000016829 I 0.000
zbtb22b Oryzias latipes ENSORLG00000006852 I 0.000
zbtb22b Tetraodon nigroviridis ENSTNIG00000000019 I 0.000
zbtb22b Takifugu rubripes ENSTRUG00000003954 I 0.000