CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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klf-1
(
Caenorhabditis elegans
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
WBGene00018990
T131630_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including apoptotic cell clearance; regulation of transcription by RNA polymerase II; and xenobiotic metabolic process. Acts upstream of or within determination of adult lifespan. Located in chromatin. Is expressed in hypodermis; intestine; and neurons. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human KLF6 (Kruppel like factor 6) and KLF7 (Kruppel like factor 7). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KLF6
M04400_2.00
Homo sapiens
NVMCACRCCCH
DGGGYGTGKBN
SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX
0.771
0.826
KLF6
M08857_2.00
Homo sapiens
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A
0.771
0.826
Klf6
M08962_2.00
Mus musculus
BYBYVNBCYMCDCCCYBBN
NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B
0.771
0.826
KLF6
M10113_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CPBP_Q6
0.771
0.826
KLF6
M04401_2.00
Homo sapiens
NRCCACGCCCH
DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX
0.771
0.826
dar1
M06171_2.00
Drosophila melanogaster
RMCACACCCWH
DWGGGTGTGKY
B1H
Zhu et al.(2011)
CG12029_SANGER_10_FBgn0035454
0.769
0.783
dar1
M06172_2.00
Drosophila melanogaster
NNNRCCACRCCCHNN
NNDGGGYGTGGYNNN
B1H
Zhu et al.(2011)
CG12029_SOLEXA_5_FBgn0035454
0.769
0.783
Klf7
M00134_2.00
Mus musculus
NHHMCRCCCH
DGGGYGKDDN
PBM
Badis et al.(2009)
Klf7_0974
0.767
0.826
luna
M03704_2.00
Drosophila melanogaster
RCCACRCCCH
DGGGYGTGGY
SELEX
Nitta et al.(2015)
luna_1
0.767
0.826
luna
M06163_2.00
Drosophila melanogaster
RRMHMCRCCC
GGGYGKDKYY
B1H
Zhu et al.(2011)
luna_SANGER_5_FBgn0040765
0.767
0.826
luna
M06164_2.00
Drosophila melanogaster
DRCCMCGCCCHNNN
NNNDGGGCGKGGYH
B1H
Zhu et al.(2011)
luna_SOLEXA_5_FBgn0040765
0.767
0.826
KLF7
M08298_2.00
Homo sapiens
VVCHMCGCCCH
DGGGCGKDGBB
ChIP-seq
Schmitges et al.(2016)
O75840.MEME
0.767
0.826
klf-3
M00617_2.00
Caenorhabditis elegans
NHMCGCCCH
DGGGCGKDN
PBM
Narasimhan et al.(2015)
pTH9072
0.764
0.739
Klf12
M00787_2.00
Mus musculus
NNHMCRCCCH
DGGGYGKDNN
PBM
Weirauch et al.(2013)
pTH0977
0.757
0.768
Klf12
M02937_2.00
Mus musculus
GRCCACGCCCWHHHN
NDDDWGGGCGTGGYC
SELEX
Jolma et al.(2013)
Klf12_1
0.757
0.768
KLF12
M04430_2.00
Homo sapiens
DRCCACGCCCH
DGGGCGTGGYH
SELEX
Yin et al.(2017)
KLF12_FL_HT-SELEX
0.757
0.768
KLF12
M08299_2.00
Homo sapiens
SBNVGCCMCGCCCHB
VDGGGCGKGGCBNVS
ChIP-seq
Schmitges et al.(2016)
Q9Y4X4.MEME
0.757
0.768
KLF12
M08879_2.00
Homo sapiens
GCCCCGCCCYB
VRGGGCGGGGC
Misc
Kulakovskiy et al.(2013)
KLF12_HUMAN.H11MO.0.C
0.757
0.768
KLF12
M10186_2.00
Homo sapiens
HMYACDG
CHGTRKD
Transfac
Matys et al.(2006)
V$AP2REP_01
0.757
0.768
KLF12
M04431_2.00
Homo sapiens
RGSCGACGCCCN
NGGGCGTCGSCY
SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_1
0.757
0.768
KLF12
M04432_2.00
Homo sapiens
NRCCACGCCCH
DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_2
0.757
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F56F11.3.1
C2H2 ZF
414
438
HHCTHPNCGKVYTKSSHLKAHFRTH
F56F11.3.1
C2H2 ZF
444
468
YECSWDGCDWRFARSDELTRHYRKH
F56F11.3.1
C2H2 ZF
474
496
FKCSQCSRAFSRSDHLSLHMKRH
F56F11.3.2
C2H2 ZF
414
438
HHCTHPNCGKVYTKSSHLKAHFRTH
F56F11.3.2
C2H2 ZF
444
468
YECSWDGCDWRFARSDELTRHYRKH
F56F11.3.2
C2H2 ZF
474
496
FKCSQCSRAFSRSDHLSLHMKRH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis elegans
TFs
408 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy