CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RSF2
(
Saccharomyces cerevisiae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
YJR127C
T131844_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RSF2
M00031_2.00
Saccharomyces cerevisiae
NDCCCCKCWN
NWGMGGGGHN
PBM
Badis et al.(2008)
ZMS1_4493
(Direct)
(Direct)
RSF2
M07461_2.00
Saccharomyces cerevisiae
NWCCCCDCW
WGHGGGGWN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0441.1
(Direct)
(Direct)
RSF2
M08532_2.00
Saccharomyces cerevisiae
NWCCCCDCW
WGHGGGGWN
Misc
DeBoer et al.(2011)
YJR127C_575
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TDA9
M00035_2.00
Saccharomyces cerevisiae
NNCCCCGCAH
DTGCGGGGNN
PBM
Badis et al.(2008)
YML081W_2152
0.781
0.848
TDA9
M01537_2.00
Saccharomyces cerevisiae
NNCCCCDCHN
NDGHGGGGNN
PBM
Zhu et al.(2009)
Yml081w
0.781
0.848
TDA9
M07465_2.00
Saccharomyces cerevisiae
NCCCCDCHN
NDGHGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0431.1
0.781
0.848
TDA9
M08537_2.00
Saccharomyces cerevisiae
NHDNRHTACCCCGCWNHNNNB
VNNNDNWGCGGGGTADYNHDN
Misc
DeBoer et al.(2011)
YML081W_848
0.781
0.848
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00031_2.00
C2H2 ZF
50
72
FLCPTCTRGFVRQEHLKRHQHSH
M00031_2.00
C2H2 ZF
78
101
YLCIFCGRCFARRDLVLRHQQKLH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YJR127C
C2H2 ZF
151
173
FLCPTCTRGFVRQEHLKRHQHSH
YJR127C
C2H2 ZF
179
202
YLCIFCGRCFARRDLVLRHQQKLH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces cerevisiae
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action