Afo_R006147 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R006147 T132811_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.824 0.986
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.824 0.986
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.824 0.986
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.824 0.986
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.824 0.986
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.824 0.986
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.824 0.986
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.824 0.986
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.822 0.978
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.787 0.978
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.891
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.891
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.784 0.891
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.891
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.784 0.891
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.784 0.891
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.891
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.891
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.891
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R006147 C2H2 ZF 185 208
Afo_R006147 C2H2 ZF 214 236
Afo_R006147 C2H2 ZF 242 264
Afo_R006147 C2H2 ZF 270 292
Afo_R006147 C2H2 ZF 298 320
Afo_R006147 C2H2 ZF 326 349

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003376 Calypte anna Aan_R003376 N
Afo_R009643 Aptenodytes forsteri Afo_R009643 N
Alligator_sinensis_CCG006444.1 Alligator sinensis Alligator_sinensis_CCG006444.1 N
Brh_R010768 Buceros rhinoceros Brh_R010768 N
Cmyd_10014723 Chelonia mydas Cmyd_10014723 N
ENSAMEG00000009742 Ailuropoda melanoleuca ENSAMEG00000009742 N
ENSAMXG00000006289 Astyanax mexicanus ENSAMXG00000006289 N
ENSBTAP00000018782-D1 Bos grunniens ENSBTAP00000018782-D1 N
ENSCSAG00000004822 Chlorocebus sabaeus ENSCSAG00000004822 N
ENSLACG00000010271 Latimeria chalumnae ENSLACG00000010271 N
ENSOARG00000004147 Ovis aries ENSOARG00000004147 N
ENSP00000348162 Macaca fascicularis ENSP00000348162 N
ENSPANG00000010840 Papio anubis ENSPANG00000010840 N
ENSPPYG00000010581 Pongo abelii ENSPPYG00000010581 N
ENSSTOG00000022278 Ictidomys tridecemlineatus ENSSTOG00000022278 N
Zfp507 Rattus norvegicus ENSRNOG00000013565 N
Zfp507 Mus musculus ENSMUSG00000044452 N
ZNF507 Oryctolagus cuniculus ENSOCUG00000014069 N
ZNF507 Ochotona princeps ENSOPRG00000016090 N
ZNF507 Gorilla gorilla ENSGGOG00000010501 N
ZNF507 Ornithorhynchus anatinus ENSOANG00000002786 N
ZNF507 Pan troglodytes ENSPTRG00000010789 N
ZNF507 Meleagris gallopavo ENSMGAG00000005461 N
ZNF507 Tursiops truncatus ENSTTRG00000017172 N
ZNF507 Homo sapiens ENSG00000168813 N
ZNF507 Felis catus ENSFCAG00000010663 N
ZNF507 Equus caballus ENSECAG00000017052 N
ZNF507 Dasypus novemcinctus ENSDNOG00000009394 N
ZNF507 Callithrix jacchus ENSCJAG00000018378 N
ZNF507 Choloepus hoffmanni ENSCHOG00000006258 N
ZNF507 Macaca mulatta ENSMMUG00000010840 N