Alligator_sinensis_CCG009677.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG009677.1 T133250_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp410
M00140_2.00 		Mus musculus
CYATCCCA
TGGGATRG		 PBM
Badis et al.(2009)
Zfp410_3034 		0.804 0.957
ZNF410
M02882_2.00 		Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM		 SELEX
Jolma et al.(2013)
ZNF410_1 		0.804 0.957
ZNF410
M04435_2.00 		Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX 		0.804 0.957
ZNF410
M04436_2.00 		Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX 		0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG009677.1 C2H2 ZF 169 193
Alligator_sinensis_CCG009677.1 C2H2 ZF 199 223
Alligator_sinensis_CCG009677.1 C2H2 ZF 229 253
Alligator_sinensis_CCG009677.1 C2H2 ZF 259 283
Alligator_sinensis_CCG009677.1 C2H2 ZF 289 312

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005705 Calypte anna Aan_R005705 I 0.827
Afo_R004479 Aptenodytes forsteri Afo_R004479 I 0.827
Brh_R010947 Buceros rhinoceros Brh_R010947 I 0.816
Cmyd_10014556 Chelonia mydas Cmyd_10014556 I 0.825
ENSAMEG00000018233 Ailuropoda melanoleuca ENSAMEG00000018233 I 0.801
ENSAMXG00000020476 Astyanax mexicanus ENSAMXG00000020476 I 0.767
ENSCSAG00000012661 Chlorocebus sabaeus ENSCSAG00000012661 I 0.804
ENSFALG00000006227 Ficedula albicollis ENSFALG00000006227 I 0.825
ENSLOCG00000011015 Lepisosteus oculatus ENSLOCG00000011015 I 0.793
ENSMMUP00000014588 Macaca fascicularis ENSMMUP00000014588 I 0.804
ENSMPUG00000009582 Mustela putorius furo ENSMPUG00000009582 I 0.811
ENSNLEG00000016090 Nomascus leucogenys ENSNLEG00000016090 I 0.804
ENSOARG00000000761 Ovis aries ENSOARG00000000761 I 0.811
ENSP00000407130-D1 Bos grunniens ENSP00000407130-D1 I 0.775
ENSPANG00000013439 Papio anubis ENSPANG00000013439 I 0.804
ENSPSIG00000014551 Pelodiscus sinensis ENSPSIG00000014551 I 0.825
ENSSHAG00000004595 Sarcophilus harrisii ENSSHAG00000004595 I 0.800
ENSTSYG00000005601 Tarsius syrichta ENSTSYG00000005601 I 0.801
ENSXMAG00000008410 Xiphophorus maculatus ENSXMAG00000008410 I 0.766
Gfo_R012933 Geospiza fortis Gfo_R012933 I 0.825
Myotis_brandtii_ZNF410_10012915 Myotis brandtii Myotis_brandtii_ZNF410_10012915 I 0.801
Pvit_15628 Pogona vitticeps Pvit_15628 I 0.802
Tal_R011336 Tyto alba Tal_R011336 I 0.827
Zfp410 Mus musculus ENSMUSG00000042472 D 0.804
Zfp410 Rattus norvegicus ENSRNOG00000010985 I 0.804
ZNF410 Cavia porcellus ENSCPOG00000009601 I 0.797
ZNF410 Equus caballus ENSECAG00000014531 I 0.801
ZNF410 Callithrix jacchus ENSCJAG00000020308 I 0.804
ZNF410 Vicugna pacos ENSVPAG00000000794 I 0.801
ZNF410 Canis familiaris ENSCAFG00000016876 I 0.801
ZNF410 Bos taurus ENSBTAG00000020327 I 0.811
ZNF410 Taeniopygia guttata ENSTGUG00000012076 I 0.825
ZNF410 Pteropus vampyrus ENSPVAG00000000640 I 0.801
ZNF410 Sus scrofa ENSSSCG00000002352 I 0.801
ZNF410 Gorilla gorilla ENSGGOG00000000715 I 0.804
ZNF410 Pan troglodytes ENSPTRG00000006525 I 0.804
ZNF410 Procavia capensis ENSPCAG00000010015 I 0.801
ZNF410 Oryctolagus cuniculus ENSOCUG00000006787 I 0.797
ZNF410 Anolis carolinensis ENSACAG00000016111 I 0.796
ZNF410 Felis catus ENSFCAG00000030643 I 0.801
ZNF410 Homo sapiens ENSG00000119725 D 0.804
ZNF410 Monodelphis domestica ENSMODG00000006622 I 0.800
ZNF410 Macaca mulatta ENSMMUG00000011144 I 0.804
ZNF410 Myotis lucifugus ENSMLUG00000008658 I 0.801
ZNF410 Microcebus murinus ENSMICG00000002992 I 0.801
ZNF410 Meleagris gallopavo ENSMGAG00000012603 I 0.827
ZNF410 Gallus gallus ENSGALG00000010193 I 0.827
ZNF410 Loxodonta africana ENSLAFG00000018117 I 0.797