Ca_16044 (Cicer arietinum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ca_16044 T133712_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.794 0.907
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.794 0.907
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.794 0.884
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.794 0.884
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.788 0.907
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.788 0.907
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.788 0.884
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.788 0.860
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.788 0.860
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.788 0.860
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.765 0.837
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.765 0.837
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.759 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_16044 C2H2 ZF 129 150
Ca_16044 C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Cicer arietinum TFs

655 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29827.m002555 Ricinus communis 29827.m002555 I
AMTR_s00149p00068500 Amborella trichopoda AMTR_s00149p00068500 I
anac071 Arabidopsis thaliana AT4G17980 D
anac071 Arabidopsis lyrata Al_scaffold_0007_2395 I
anac096 Arabidopsis thaliana AT5G46590 D
anac096 Arabidopsis lyrata fgenesh2_kg.8__135__AT5G46590.1 I
Aquca_044_00122 Aquilegia coerulea Aquca_044_00122 I
BGIOSGA033482 Oryza indica BGIOSGA033482 I
Bo1g019130 Brassica oleracea Bo1g019130 I
Bo2g130240 Brassica oleracea Bo2g130240 I
Bo7g075540 Brassica oleracea Bo7g075540 I
Bo7g105630 Brassica oleracea Bo7g105630 I
Bostr.30275s0267 Boechera stricta Bostr.30275s0267 I
Bostr.4485s0006 Boechera stricta Bostr.4485s0006 I
Bra012626 Brassica rapa Bra012626 I
Bra013272 Brassica rapa Bra013272 I
Bra022046 Brassica rapa Bra022046 I
Bra025012 Brassica rapa Bra025012 I
BRADI3G33957 Brachypodium distachyon BRADI3G33957 I
Cagra.0569s0030 Capsella grandiflora Cagra.0569s0030 I
Cagra.3356s0092 Capsella grandiflora Cagra.3356s0092 I
Carubv10007390m.g Capsella rubella Carubv10007390m.g I
Carubv10028284m.g Capsella rubella Carubv10028284m.g I
cassava22941.valid.m1 Manihot esculenta cassava22941.valid.m1 I
Ca_02274 Cicer arietinum Ca_02274 I
Ca_12837 Cicer arietinum Ca_12837 I
chr2.CM0021.650.nc Lotus japonicus chr2.CM0021.650.nc I
Ciclev10031966m.g Citrus clementina Ciclev10031966m.g I
Cla016424 Citrullus lanatus Cla016424 I
Cucsa.313350 Cucumis sativus Cucsa.313350 I
Eucgr.D02182 Eucalyptus grandis Eucgr.D02182 I
Eucgr.E00298 Eucalyptus grandis Eucgr.E00298 I
evm.TU.supercontig_90.52 Carica papaya evm.TU.supercontig_90.52 I
F775_28577 Aegilops tauschii F775_28577 I
gene10722-v1.0-hybrid Fragaria vesca gene10722-v1.0-hybrid I
GLYMA05G23840 Glycine max GLYMA05G23840 I
GLYMA17G16500 Glycine max GLYMA17G16500 I
Gorai.003G180600 Gossypium raimondii Gorai.003G180600 I
Gorai.004G186700 Gossypium raimondii Gorai.004G186700 I
Gorai.007G031300 Gossypium raimondii Gorai.007G031300 I
Gorai.008G227800 Gossypium raimondii Gorai.008G227800 I
GRMZM2G082709 Zea mays GRMZM2G082709 I
GSMUA_Achr11G17780_001 Musa acuminata GSMUA_Achr11G17780_001 I
GSMUA_Achr5G03360_001 Musa acuminata GSMUA_Achr5G03360_001 I
LPERR10G15090 Leersia perrieri LPERR10G15090 I
Lus10030978.g Linum usitatissimum Lus10030978.g I
Lus10035373.g Linum usitatissimum Lus10035373.g I
MDP0000119446 Malus domestica MDP0000119446 I
MDP0000936269 Malus domestica MDP0000936269 I
mgf019012m Mimulus guttatus mgf019012m I
MLOC_58950 Hordeum vulgare MLOC_58950 I
MTR_4g098630 Medicago truncatula MTR_4g098630 I
MTR_5g014300 Medicago truncatula MTR_5g014300 I
OB10G26350 Oryza brachyantha OB10G26350 I
OBART10G19230 Oryza barthii OBART10G19230 I
OGLUM10G19330 Oryza glumaepatula OGLUM10G19330 I
OLONG_018722 Oryza longistaminata OLONG_018722 I
OMERI07G08100 Oryza meridionalis OMERI07G08100 I
ONIVA10G21790 Oryza nivara ONIVA10G21790 I
OPUNC10G17630 Oryza punctata OPUNC10G17630 I
orange1.1g018835m.g Citrus sinensis orange1.1g018835m.g I
ORGLA10G0144100 Oryza glaberrima ORGLA10G0144100 I
ORUFI10G20470 Oryza rufipogon ORUFI10G20470 I
Pavir.Ia03491 Panicum virgatum Pavir.Ia03491 I
Pavir.Ib02435 Panicum virgatum Pavir.Ib02435 I
PGSC0003DMG400017505 Solanum tuberosum PGSC0003DMG400017505 I
PK00339.1 Cannabis sativa PK00339.1 I
Pm023277 Prunus mume Pm023277 I
POPTR_0001s02710 Populus trichocarpa POPTR_0001s02710 I
POPTR_0003s08830 Populus trichocarpa POPTR_0003s08830 I
SapurV1A.0846s0080 Salix purpurea SapurV1A.0846s0080 I
SapurV1A.0900s0060 Salix purpurea SapurV1A.0900s0060 I
Sb01g028450 Sorghum bicolor Sb01g028450 I
Si036301m.g Setaria italica Si036301m.g I
Solyc06g061080.2 Solanum lycopersicum Solyc06g061080.2 I
Solyc08g077110.2 Solanum lycopersicum Solyc08g077110.2 I
TCM_015749 Theobroma cacao TCM_015749 I
Thhalv10001200m.g Eutrema salsugineum Thhalv10001200m.g I
Thhalv10027064m.g Eutrema salsugineum Thhalv10027064m.g I
Traes_1AL_D6C49C3BC Triticum aestivum Traes_1AL_D6C49C3BC I
Traes_1BL_8925B27BC Triticum aestivum Traes_1BL_8925B27BC I
TRIUR3_22131 Triticum urartu TRIUR3_22131 I
VIT_02s0012g01040 Vitis vinifera VIT_02s0012g01040 I