Myotis_brandtii_PRDM4_10020406 (Myotis brandtii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Myotis_brandtii_PRDM4_10020406 T136099_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 0.993
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 0.993
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 0.993
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 590 612
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 618 640
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 646 668
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 674 696
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 702 724
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 730 751

Links

Other C2H2 ZF family TFs
Other Myotis brandtii TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB008437 Anopheles albimanus AALB008437 N 0.000
Aan_R004293 Calypte anna Aan_R004293 I 0.000
AARA004781 Anopheles arabiensis AARA004781 N 0.000
AATE013597 Anopheles atroparvus AATE013597 N 0.000
ACHR003356 Anopheles christyi ACHR003356 N 0.000
ACOM037387 Anopheles coluzzii ACOM037387 N 0.000
ACUA011195 Anopheles culicifacies ACUA011195 N 0.000
ADAC004994 Anopheles darlingi ADAC004994 N 0.000
ADIR005830 Anopheles dirus ADIR005830 N 0.000
AEPI002581 Anopheles epiroticus AEPI002581 N 0.000
AFAF011251 Anopheles farauti AFAF011251 N 0.000
Afo_R013625 Aptenodytes forsteri Afo_R013625 I 0.000
AFUN007742 Anopheles funestus AFUN007742 N 0.000
AGAP013301 Anopheles gambiae AGAP013301 N 0.000
AMAM016638 Anopheles maculatus AMAM016638 N 0.000
AMEC012788 Anopheles melas AMEC012788 N 0.000
AMEC018911 Anopheles melas AMEC018911 N 0.000
AMEM002981 Anopheles merus AMEM002981 N 0.000
AMIN003152 Anopheles minimus AMIN003152 N 0.000
AQUA000209 Anopheles quadriannulatus AQUA000209 N 0.000
ASIS002756 Anopheles sinensis ASIS002756 N 0.000
ASTEI00514 Anopheles stephensi ASTEI00514 N 0.000
BGIBMGA013173 Bombyx mori BGIBMGA013173 N 0.000
Brh_R005672 Buceros rhinoceros Brh_R005672 I 0.000
CPIJ015473 Culex quinquefasciatus CPIJ015473 I 0.000
CpipJ_CPIJ015473 Culex pipiens CpipJ_CPIJ015473 I 0.000
ENSAMEG00000007541 Ailuropoda melanoleuca ENSAMEG00000007541 I 0.000
ENSAMXG00000008763 Astyanax mexicanus ENSAMXG00000008763 I 0.000
ENSAMXG00000020050 Astyanax mexicanus ENSAMXG00000020050 I 0.000
ENSAPLG00000003927 Anas platyrhynchos ENSAPLG00000003927 I 0.000
ENSCPOG00000014839 Cavia porcellus ENSCPOG00000014839 I 0.000
ENSCSAG00000013771 Chlorocebus sabaeus ENSCSAG00000013771 I 0.000
ENSFALG00000004754 Ficedula albicollis ENSFALG00000004754 I 0.000
ENSGMOG00000006979 Gadus morhua ENSGMOG00000006979 I 0.000
ENSGMOG00000011558 Gadus morhua ENSGMOG00000011558 I 0.000
ENSLACG00000018117 Latimeria chalumnae ENSLACG00000018117 I 0.000
ENSLOCG00000004411 Lepisosteus oculatus ENSLOCG00000004411 I 0.000
ENSMEUG00000015884 Macropus eugenii ENSMEUG00000015884 I 0.000
ENSMPUG00000012867 Mustela putorius furo ENSMPUG00000012867 I 0.000
ENSOARG00000015698 Ovis aries ENSOARG00000015698 I 0.000
ENSONIG00000008133 Oreochromis niloticus ENSONIG00000008133 I 0.000
ENSONIG00000008731 Oreochromis niloticus ENSONIG00000008731 I 0.000
ENSP00000384177-D1 Bos grunniens ENSP00000384177-D1 I 0.000
ENSPANG00000024466 Papio anubis ENSPANG00000024466 I 0.000
ENSPFOG00000010412 Poecilia formosa ENSPFOG00000010412 I 0.000
ENSPFOG00000015158 Poecilia formosa ENSPFOG00000015158 I 0.000
ENSPSIG00000013581 Pelodiscus sinensis ENSPSIG00000013581 I 0.000
ENSPVAG00000002166 Pteropus vampyrus ENSPVAG00000002166 I 0.000
ENSSTOG00000026802 Ictidomys tridecemlineatus ENSSTOG00000026802 I 0.000
ENSXMAG00000008629 Xiphophorus maculatus ENSXMAG00000008629 I 0.000
ENSXMAG00000011266 Xiphophorus maculatus ENSXMAG00000011266 I 0.000
GB51809 Apis mellifera GB51809 N 0.000
Gfo_R012737 Geospiza fortis Gfo_R012737 I 0.000
HMEL003564 Heliconius melpomene HMEL003564 N 0.000
LDEC010970 Leptinotarsa decemlineata LDEC010970 I 0.000
MCINX010388 Melitaea cinxia MCINX010388 N 0.000
MNT Otolemur garnettii ENSOGAG00000004499 I 0.000
MNT Dasypus novemcinctus ENSDNOG00000040019 I 0.000
MNT Danio rerio ENSDARG00000101859 I 0.000
MNT Oryzias latipes ENSORLG00000007865 I 0.000
MNT Callithrix jacchus ENSCJAG00000012389 I 0.000
MNT Canis familiaris ENSCAFG00000019295 I 0.000
MNT Bos taurus ENSBTAG00000025129 I 0.000
MNT Felis catus ENSFCAG00000006315 I 0.000
MNT Oryctolagus cuniculus ENSOCUG00000016100 I 0.000
Mnt Mus musculus ENSMUSG00000000282 D 0.000
MNT Monodelphis domestica ENSMODG00000010713 I 0.000
MNT Macaca mulatta ENSMMUG00000022004 I 0.000
MNT Meleagris gallopavo ENSMGAG00000008592 I 0.000
MNT Gorilla gorilla ENSGGOG00000002455 I 0.000
MNT Procavia capensis ENSPCAG00000013160 I 0.000
MNT Homo sapiens ENSG00000070444 D 0.000
MNT Pan troglodytes ENSPTRG00000008549 I 0.000
Mnt Rattus norvegicus ENSRNOG00000002894 I 0.000
MNT Gasterosteus aculeatus ENSGACG00000008790 I 0.000
MNT Gallus gallus ENSGALG00000005830 I 0.000
MNT Taeniopygia guttata ENSTGUG00000008774 I 0.000
mnt.L Xenopus laevis XB-GENE-6087152 I 0.000
mntb Takifugu rubripes ENSTRUG00000011273 I 0.000
mntb Danio rerio ENSDARG00000073988 I 0.000
mntb Oryzias latipes ENSORLG00000002734 I 0.000
mntb Gasterosteus aculeatus ENSGACG00000020487 I 0.000
NV24716 Nasonia vitripennis NV24716 N 0.000
Ogr16275 Ophisaurus gracilis Ogr16275 I 0.000
Pvit_02549 Pogona vitticeps Pvit_02549 I 0.000
TC015361 Tribolium castaneum TC015361 I 0.000