Tal_R006464 (Tyto alba)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Tal_R006464 T137641_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.824 0.986
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.824 0.986
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.824 0.986
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.824 0.986
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.824 0.986
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.824 0.986
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.824 0.986
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.824 0.986
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.822 0.978
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.787 0.978
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.891
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.891
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.784 0.891
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.891
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.784 0.891
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.784 0.891
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.891
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.891
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.891
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Tal_R006464 C2H2 ZF 183 206
Tal_R006464 C2H2 ZF 212 234
Tal_R006464 C2H2 ZF 240 262
Tal_R006464 C2H2 ZF 268 290
Tal_R006464 C2H2 ZF 296 318
Tal_R006464 C2H2 ZF 324 347

Links

Other C2H2 ZF family TFs
Other Tyto alba TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28206.m000104 Ricinus communis 28206.m000104 I
29904.m002941 Ricinus communis 29904.m002941 I
29908.m006005 Ricinus communis 29908.m006005 I
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I
BGIOSGA011298 Oryza indica BGIOSGA011298 I
BGIOSGA028650 Oryza indica BGIOSGA028650 I
BGIOSGA030624 Oryza indica BGIOSGA030624 I
Bo00790s010 Brassica oleracea Bo00790s010 I
Bo04101s010 Brassica oleracea Bo04101s010 I
Bo1g002840 Brassica oleracea Bo1g002840 I
Bo3g152610 Brassica oleracea Bo3g152610 I
Bo5g037400 Brassica oleracea Bo5g037400 I
Bo5g069450 Brassica oleracea Bo5g069450 I
Bo6g081850 Brassica oleracea Bo6g081850 I
Bo6g121730 Brassica oleracea Bo6g121730 I
Bo7g119000 Brassica oleracea Bo7g119000 I
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I
Bostr.5022s0013 Boechera stricta Bostr.5022s0013 I
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I
Bra003659 Brassica rapa Bra003659 I
Bra008343 Brassica rapa Bra008343 I
Bra011833 Brassica rapa Bra011833 I
Bra015634 Brassica rapa Bra015634 I
Bra017879 Brassica rapa Bra017879 I
Bra024358 Brassica rapa Bra024358 I
Bra031371 Brassica rapa Bra031371 I
Bra040381 Brassica rapa Bra040381 I
BRADI1G71740 Brachypodium distachyon BRADI1G71740 I
BRADI3G24000 Brachypodium distachyon BRADI3G24000 I
BRADI3G35560 Brachypodium distachyon BRADI3G35560 I
BRADI4G29010 Brachypodium distachyon BRADI4G29010 I
BRADI5G16450 Brachypodium distachyon BRADI5G16450 I
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I
Carubv10007787m.g Capsella rubella Carubv10007787m.g I
Carubv10009949m.g Capsella rubella Carubv10009949m.g I
Carubv10012538m.g Capsella rubella Carubv10012538m.g I
Carubv10014129m.g Capsella rubella Carubv10014129m.g I
Carubv10020567m.g Capsella rubella Carubv10020567m.g I
cassava10153.m1 Manihot esculenta cassava10153.m1 I
cassava14392.m1 Manihot esculenta cassava14392.m1 I
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I
cassava27742.m1 Manihot esculenta cassava27742.m1 I
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I
Ca_09578 Cicer arietinum Ca_09578 I
Ca_16631 Cicer arietinum Ca_16631 I
Ca_23799 Cicer arietinum Ca_23799 I
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I
chr4.CM0307.180.nc Lotus japonicus chr4.CM0307.180.nc I
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I
Ciclev10007069m.g Citrus clementina Ciclev10007069m.g I
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I
Cla003007 Citrullus lanatus Cla003007 I
Cla014376 Citrullus lanatus Cla014376 I
Cla022420 Citrullus lanatus Cla022420 I
Cla023489 Citrullus lanatus Cla023489 I
Cucsa.064390 Cucumis sativus Cucsa.064390 I
Cucsa.104510 Cucumis sativus Cucsa.104510 I
Cucsa.154520 Cucumis sativus Cucsa.154520 I
Cucsa.193930 Cucumis sativus Cucsa.193930 I
ERF055 Arabidopsis thaliana AT1G36060 D
ERF060 Arabidopsis thaliana AT4G39780 I
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I
Eucgr.H02782 Eucalyptus grandis Eucgr.H02782 I
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I
gene06669-v1.0-hybrid Fragaria vesca gene06669-v1.0-hybrid I
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I
GLYMA04G11290 Glycine max GLYMA04G11290 I
GLYMA05G31370 Glycine max GLYMA05G31370 I
GLYMA06G11010 Glycine max GLYMA06G11010 I
GLYMA08G14600 Glycine max GLYMA08G14600 I
GLYMA13G01930 Glycine max GLYMA13G01930 I
GLYMA14G34590 Glycine max GLYMA14G34590 I
GLYMA18G02170 Glycine max GLYMA18G02170 I
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I
Gorai.011G157500 Gossypium raimondii Gorai.011G157500 I
GRMZM2G003466 Zea mays GRMZM2G003466 I
GRMZM2G026926 Zea mays GRMZM2G026926 I
GRMZM2G039870 Zea mays GRMZM2G039870 I
GRMZM2G061487 Zea mays GRMZM2G061487 I
GRMZM2G113060 Zea mays GRMZM2G113060 I
GRMZM2G141679 Zea mays GRMZM2G141679 I
GRMZM5G852704 Zea mays GRMZM5G852704 I
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I
GSMUA_Achr3G04360_001 Musa acuminata GSMUA_Achr3G04360_001 I
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I
LPERR03G05980 Leersia perrieri LPERR03G05980 I
LPERR06G07210 Leersia perrieri LPERR06G07210 I
LPERR08G11750 Leersia perrieri LPERR08G11750 I
LPERR09G05410 Leersia perrieri LPERR09G05410 I
Lus10000582.g Linum usitatissimum Lus10000582.g I
Lus10007124.g Linum usitatissimum Lus10007124.g I
Lus10016669.g Linum usitatissimum Lus10016669.g I
Lus10016801.g Linum usitatissimum Lus10016801.g I
Lus10019665.g Linum usitatissimum Lus10019665.g I
Lus10020913.g Linum usitatissimum Lus10020913.g I
Lus10033463.g Linum usitatissimum Lus10033463.g I
MDP0000246184 Malus domestica MDP0000246184 I
MDP0000313476 Malus domestica MDP0000313476 I
MDP0000453797 Malus domestica MDP0000453797 I
MDP0000683814 Malus domestica MDP0000683814 I
MDP0000865032 Malus domestica MDP0000865032 I
mgf002388m Mimulus guttatus mgf002388m I
mgf012639m Mimulus guttatus mgf012639m I
mgf022495m Mimulus guttatus mgf022495m I
mgf023311m Mimulus guttatus mgf023311m I
MTR_3g074130 Medicago truncatula MTR_3g074130 I
MTR_5g062700 Medicago truncatula MTR_5g062700 I
MTR_8g090350 Medicago truncatula MTR_8g090350 I
OB09G15200 Oryza brachyantha OB09G15200 I
OBART08G14280 Oryza barthii OBART08G14280 I
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I
OGLUM08G15030 Oryza glumaepatula OGLUM08G15030 I
OGLUM09G08150 Oryza glumaepatula OGLUM09G08150 I
OMERI03G06570 Oryza meridionalis OMERI03G06570 I
OMERI09G06210 Oryza meridionalis OMERI09G06210 I
OMERI09G06220 Oryza meridionalis OMERI09G06220 I
ONIVA03G06360 Oryza nivara ONIVA03G06360 I
ONIVA08G15160 Oryza nivara ONIVA08G15160 I
ONIVA09G06980 Oryza nivara ONIVA09G06980 I
OPUNC03G06400 Oryza punctata OPUNC03G06400 I
OPUNC08G13450 Oryza punctata OPUNC08G13450 I
OPUNC09G06680 Oryza punctata OPUNC09G06680 I
orange1.1g015775m.g Citrus sinensis orange1.1g015775m.g I
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I
ORGLA08G0124900 Oryza glaberrima ORGLA08G0124900 I
ORGLA09G0057100 Oryza glaberrima ORGLA09G0057100 I
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I
ORUFI08G16150 Oryza rufipogon ORUFI08G16150 I
ORUFI09G08380 Oryza rufipogon ORUFI09G08380 I
OS03G0191900 Oryza sativa OS03G0191900 I
OS08G0408500 Oryza sativa OS08G0408500 I
Pavir.Ba02199 Panicum virgatum Pavir.Ba02199 I
Pavir.Bb01980 Panicum virgatum Pavir.Bb01980 I
Pavir.Da01302 Panicum virgatum Pavir.Da01302 I
Pavir.Db01823 Panicum virgatum Pavir.Db01823 I
Pavir.Fa01600 Panicum virgatum Pavir.Fa01600 I
Pavir.Fb01192 Panicum virgatum Pavir.Fb01192 I
Pavir.Ga00913 Panicum virgatum Pavir.Ga00913 I
Pavir.Gb00710 Panicum virgatum Pavir.Gb00710 I
Pavir.Ia02495 Panicum virgatum Pavir.Ia02495 I
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I
Pavir.Ib02920 Panicum virgatum Pavir.Ib02920 I
Pavir.J13316 Panicum virgatum Pavir.J13316 I
Pavir.J25956 Panicum virgatum Pavir.J25956 I
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I
PGSC0003DMG400009475 Solanum tuberosum PGSC0003DMG400009475 I
PGSC0003DMG400018352 Solanum tuberosum PGSC0003DMG400018352 I
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I
PGSC0003DMG400031294 Solanum tuberosum PGSC0003DMG400031294 I
PK18885.1 Cannabis sativa PK18885.1 I
PK27482.1 Cannabis sativa PK27482.1 I
Pm002052 Prunus mume Pm002052 I
Pm004824 Prunus mume Pm004824 I
Pm009494 Prunus mume Pm009494 I
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I
RAP2-13 Arabidopsis thaliana AT1G22190 I
RAP2-4 Arabidopsis thaliana AT1G78080 D
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I
SapurV1A.1542s0030 Salix purpurea SapurV1A.1542s0030 I
SapurV1A.6751s0010 Salix purpurea SapurV1A.6751s0010 I
Sb01g044410 Sorghum bicolor Sb01g044410 I
Sb02g023230 Sorghum bicolor Sb02g023230 I
Sb06g023313 Sorghum bicolor Sb06g023313 I
Sb07g020090 Sorghum bicolor Sb07g020090 I
Sb10g007780 Sorghum bicolor Sb10g007780 I
scaffold_400172.1 Arabidopsis lyrata scaffold_400172.1 I
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I
SELMODRAFT_15839 Selaginella moellendorffii SELMODRAFT_15839 I
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I
Si012169m.g Setaria italica Si012169m.g I
Si030684m.g Setaria italica Si030684m.g I
Si036827m.g Setaria italica Si036827m.g I
Si036893m.g Setaria italica Si036893m.g I
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I
Solyc04g072900.1 Solanum lycopersicum Solyc04g072900.1 I
Solyc07g054220.1 Solanum lycopersicum Solyc07g054220.1 I
Solyc09g091950.1 Solanum lycopersicum Solyc09g091950.1 I
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I
TCM_001147 Theobroma cacao TCM_001147 I
TCM_020321 Theobroma cacao TCM_020321 I
TCM_034939 Theobroma cacao TCM_034939 I
Thhalv10005326m.g Eutrema salsugineum Thhalv10005326m.g I
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I
Traes_4AS_1E79E1072 Triticum aestivum Traes_4AS_1E79E1072 I
Traes_4BL_71E35BBC1 Triticum aestivum Traes_4BL_71E35BBC1 I
Traes_5BL_4D65B66E2 Triticum aestivum Traes_5BL_4D65B66E2 I
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I
VIT_05s0029g00140 Vitis vinifera VIT_05s0029g00140 I
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I