29154.m000218 (Ricinus communis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 29154.m000218 T137770_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29154.m000218 C2H2 ZF 36 58
29154.m000218 C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Ricinus communis TFs

377 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA006277 Oryza indica BGIOSGA006277 N
BGIOSGA022378 Oryza indica BGIOSGA022378 N
BGIOSGA037035 Oryza indica BGIOSGA037035 N
BRADI1G48350 Brachypodium distachyon BRADI1G48350 N
BRADI3G45470 Brachypodium distachyon BRADI3G45470 N
BRADI4G41960 Brachypodium distachyon BRADI4G41960 N
GRMZM2G034868 Zea mays GRMZM2G034868 N
GRMZM2G043250 Zea mays GRMZM2G043250 N
GRMZM2G048987 Zea mays GRMZM2G048987 N
MLOC_13034 Hordeum vulgare MLOC_13034 N
MLOC_43316 Hordeum vulgare MLOC_43316 N
MLOC_62808 Hordeum vulgare MLOC_62808 N
OB02G27690 Oryza brachyantha OB02G27690 N
OB06G14070 Oryza brachyantha OB06G14070 N
OB12G13670 Oryza brachyantha OB12G13670 N
OLONG_000187 Oryza longistaminata OLONG_000187 N
OLONG_002410 Oryza longistaminata OLONG_002410 N
OLONG_014957 Oryza longistaminata OLONG_014957 N
ONIVA02G22250 Oryza nivara ONIVA02G22250 N
ONIVA06G05610 Oryza nivara ONIVA06G05610 N
ORGLA02G0172700 Oryza glaberrima ORGLA02G0172700 N
ORGLA06G0040800 Oryza glaberrima ORGLA06G0040800 N
ORGLA12G0035900 Oryza glaberrima ORGLA12G0035900 N
OS02G0550900 Oryza sativa OS02G0550900 N
OS06G0166100 Oryza sativa OS06G0166100 N
OS12G0160900 Oryza sativa OS12G0160900 N
Pavir.Aa01718 Panicum virgatum Pavir.Aa01718 N
Pavir.Ab01899 Panicum virgatum Pavir.Ab01899 N
Pavir.Ba00843 Panicum virgatum Pavir.Ba00843 N
Pavir.Bb02863 Panicum virgatum Pavir.Bb02863 N
Pavir.Ca00202 Panicum virgatum Pavir.Ca00202 N
Pavir.Cb02030 Panicum virgatum Pavir.Cb02030 N
Sb02g034560 Sorghum bicolor Sb02g034560 N
Sb04g022400 Sorghum bicolor Sb04g022400 N
Sb08g003780 Sorghum bicolor Sb08g003780 N
Si009370m.g Setaria italica Si009370m.g N
Si016477m.g Setaria italica Si016477m.g N
Si029002m.g Setaria italica Si029002m.g N
Traes_4AL_8B3A3CC2F Triticum aestivum Traes_4AL_8B3A3CC2F N
Traes_5AS_385093B54 Triticum aestivum Traes_5AS_385093B54 N
Traes_5BS_BCC406654 Triticum aestivum Traes_5BS_BCC406654 N
Traes_5DS_620A46565 Triticum aestivum Traes_5DS_620A46565 N
Traes_7BS_1B525AFF5 Triticum aestivum Traes_7BS_1B525AFF5 N
Traes_7DS_016F8E2EA Triticum aestivum Traes_7DS_016F8E2EA N
Traes_7DS_559DD9894 Triticum aestivum Traes_7DS_559DD9894 N
TRIUR3_03719 Triticum urartu TRIUR3_03719 N
TRIUR3_25143 Triticum urartu TRIUR3_25143 N