cassava8924.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava8924.m1 T137895_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.795 0.804
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.795 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.791 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.785 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.785 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.717
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.771 0.783
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava8924.m1 C2H2 ZF 49 71
cassava8924.m1 C2H2 ZF 105 127

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

351 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_062880 Acremonium chrysogenum ACRE_062880 I 0.000
AOL_s00078g326 Arthrobotrys oligospora AOL_s00078g326 N 0.000
BBA_07891 Beauveria bassiana BBA_07891 N 0.000
Bcin02g04140 Botrytis cinerea Bcin02g04140 N 0.000
CCM_06226 Cordyceps militaris CCM_06226 N 0.000
CSUB01_03595 Colletotrichum sublineola CSUB01_03595 I 0.000
GLRG_01353 Colletotrichum graminicola GLRG_01353 I 0.000
GMDG_05105 Pseudogymnoascus destructans GMDG_05105 N 0.000
H072_7690 Dactylellina haptotyla H072_7690 N 0.000
M7I_4877 Glarea lozoyensis M7I_4877 I 0.000
OIDMADRAFT_129628 Oidiodendron maius OIDMADRAFT_129628 N 0.000
S40285_00620 Stachybotrys chlorohalonata S40285_00620 I 0.000
S40288_07855 Stachybotrys chartarum S40288_07855 I 0.000
SBOR_6525 Sclerotinia borealis SBOR_6525 N 0.000
SS1G_01411 Sclerotinia sclerotiorum SS1G_01411 N 0.000
UCRPA7_6727 Togninia minima UCRPA7_6727 I 0.000
V499_03811 Pseudogymnoascus pannorum V499_03811 N 0.000