Cucsa.379890 (Cucumis sativus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cucsa.379890 T137950_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.848
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.762 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.379890.1 C2H2 ZF 14 36
Cucsa.379890.1 C2H2 ZF 59 81

Links

Other C2H2 ZF family TFs
Other Cucumis sativus TFs

378 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000009901 Angiostrongylus cantonensis ACAC_0000009901 N 0.000
ANCCAN_06777 Ancylostoma caninum ANCCAN_06777 N 0.000
ANCCAN_24534 Ancylostoma caninum ANCCAN_24534 N 0.000
ANCCEY_09857 Ancylostoma ceylanicum ANCCEY_09857 N 0.000
ANCDUO_18397 Ancylostoma duodenale ANCDUO_18397 N 0.000
HCOI00739900 Haemonchus contortus HCOI00739900 N 0.000
HCOI01994100 Haemonchus contortus HCOI01994100 N 0.000
NECAME_19305 Necator americanus NECAME_19305 N 0.000
TELCIR_12260 Teladorsagia circumcincta TELCIR_12260 N 0.000
TELCIR_19595 Teladorsagia circumcincta TELCIR_19595 N 0.000