CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh2_pg.C_1630069
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
estExt_fgenesh2_pg.C_1630069
T138628_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_1630069
C2H2 ZF
65
87
YQCGNCNRQFTYLCQLKSHMRTH
estExt_fgenesh2_pg.C_1630069
C2H2 ZF
93
115
YHCGECNRQFSQLCSLKAHMRTH
estExt_fgenesh2_pg.C_1630069
C2H2 ZF
121
143
YRCEECGRRFSQQSSLQKHMFVH
estExt_fgenesh2_pg.C_1630069
C2H2 ZF
149
171
FKCGVCNMQFSRQGNLKTHMQIH
estExt_fgenesh2_pg.C_1630069
C2H2 ZF
177
200
FRCDVCNTRFSRLCSLNKHMARFH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
drm
Drosophila melanogaster
FBgn0024244
N
GA10010
Drosophila pseudoobscura
FBgn0070069
N
GD23242
Drosophila simulans
FBgn0194630
N
GE18245
Drosophila yakuba
FBgn0235673
N
GF15244
Drosophila ananassae
FBgn0092269
N
GG24954
Drosophila erecta
FBgn0117083
N
GH13695
Drosophila grimshawi
FBgn0121171
N
GI23833
Drosophila mojavensis
FBgn0146558
N
GJ21080
Drosophila virilis
FBgn0208214
N
GK14638
Drosophila willistoni
FBgn0216644
N
GL18663
Drosophila persimilis
FBgn0156264
N
LCUP002078
Lucilia cuprina
LCUP002078
N
LDEC019659
Leptinotarsa decemlineata
LDEC019659
N
LLOJ001391
Lutzomyia longipalpis
LLOJ001391
N
MDOA013590
Musca domestica
MDOA013590
N
PPAI007177
Phlebotomus papatasi
PPAI007177
N