CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0612s0086
(
Capsella grandiflora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cagra.0612s0086
T142633_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.822
0.935
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN
NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.822
0.935
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.772
0.783
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.766
0.717
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.762
0.717
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.762
0.717
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.761
0.717
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0612s0086.1.p
C2H2 ZF
49
71
FECKTCNRIFDSFQALGGHRASH
Cagra.0612s0086.1.p
C2H2 ZF
93
115
HKCSICDQVFGTGQALGGHMRKH
Links
Other
C2H2 ZF
family TFs
Other
Capsella grandiflora
TFs
313 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PDIP_66000
Penicillium digitatum
PDIP_66000
N
0.000
PEX1_093530
Penicillium expansum
PEX1_093530
N
0.000
U727_00432193331
Penicillium solitum
U727_00432193331
N
0.000
UCREL1_6533
Eutypa lata
UCREL1_6533
N
0.000