Cagra.0612s0086 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.0612s0086 T142633_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.822 0.935
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.822 0.935
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.772 0.783
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.766 0.717
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.762 0.717
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.762 0.717
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0612s0086.1.p C2H2 ZF 49 71
Cagra.0612s0086.1.p C2H2 ZF 93 115

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

313 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDIP_66000 Penicillium digitatum PDIP_66000 N 0.000
PEX1_093530 Penicillium expansum PEX1_093530 N 0.000
U727_00432193331 Penicillium solitum U727_00432193331 N 0.000
UCREL1_6533 Eutypa lata UCREL1_6533 N 0.000