Cagra.1317s0034 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.1317s0034 T142644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.803 0.935
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.717
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1317s0034.1.p C2H2 ZF 41 63
Cagra.1317s0034.1.p C2H2 ZF 87 109

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1YGC6_PANPA Pan paniscus A1YGC6_PANPA D
AAEL003020 Aedes aegypti AAEL003020 I
AAEL005381 Aedes aegypti AAEL005381 I
AALB000508 Anopheles albimanus AALB000508 I
AALB002684 Anopheles albimanus AALB002684 I
AALB003284 Anopheles albimanus AALB003284 I
Aan_R007044 Calypte anna Aan_R007044 I
AARA001809 Anopheles arabiensis AARA001809 I
AARA002508 Anopheles arabiensis AARA002508 I
AARA011806 Anopheles arabiensis AARA011806 I
AATE006105 Anopheles atroparvus AATE006105 I
AATE006814 Anopheles atroparvus AATE006814 I
AATE017601 Anopheles atroparvus AATE017601 I
ACAC_0001268701 Angiostrongylus cantonensis ACAC_0001268701 I
ACEP27077 Atta cephalotes ACEP27077 I
ACHR006241 Anopheles christyi ACHR006241 I
ACOC_0000908001 Angiostrongylus costaricensis ACOC_0000908001 I
ACOM032542 Anopheles coluzzii ACOM032542 I
ACOM033973 Anopheles coluzzii ACOM033973 I
ACOM036097 Anopheles coluzzii ACOM036097 I
ACUA015273 Anopheles culicifacies ACUA015273 I
ACUA020513 Anopheles culicifacies ACUA020513 I
ACYPI009360 Acyrthosiphon pisum ACYPI009360 I
ACYPI56792 Acyrthosiphon pisum ACYPI56792 I
ADAC006907 Anopheles darlingi ADAC006907 I
ADIR001527 Anopheles dirus ADIR001527 I
ADIR010552 Anopheles dirus ADIR010552 I
ADIR011495 Anopheles dirus ADIR011495 I
AEPI001141 Anopheles epiroticus AEPI001141 I
AEPI011017 Anopheles epiroticus AEPI011017 I
AFAF007327 Anopheles farauti AFAF007327 I
AFAF018214 Anopheles farauti AFAF018214 I
AFAF018414 Anopheles farauti AFAF018414 I
AFUN001116 Anopheles funestus AFUN001116 I
AFUN007550 Anopheles funestus AFUN007550 I
AFUN008855 Anopheles funestus AFUN008855 I
AGAP000819 Anopheles gambiae AGAP000819 I
AGAP001348 Anopheles gambiae AGAP001348 I
AGAP009575 Anopheles gambiae AGAP009575 I
Alligator_sinensis_CCG021621.1 Alligator sinensis Alligator_sinensis_CCG021621.1 I
ALUE_0000403201 Ascaris lumbricoides ALUE_0000403201 I
ALUE_0000688601 Ascaris lumbricoides ALUE_0000688601 I
AMAM000431 Anopheles maculatus AMAM000431 I
AMAM020935 Anopheles maculatus AMAM020935 I
AMEC009570 Anopheles melas AMEC009570 I
AMEC010971 Anopheles melas AMEC010971 I
AMEC019536 Anopheles melas AMEC019536 I
AMEM005434 Anopheles merus AMEM005434 I
AMEM007574 Anopheles merus AMEM007574 I
AMIN000538 Anopheles minimus AMIN000538 I
AMIN005547 Anopheles minimus AMIN005547 I
ANCCAN_24590 Ancylostoma caninum ANCCAN_24590 I
AQUA002816 Anopheles quadriannulatus AQUA002816 I
AQUA006534 Anopheles quadriannulatus AQUA006534 I
AQUA007553 Anopheles quadriannulatus AQUA007553 I
ASIS014807 Anopheles sinensis ASIS014807 I
ASIS017452 Anopheles sinensis ASIS017452 I
ASTEI01071 Anopheles stephensi ASTEI01071 I
ASTEI03772 Anopheles stephensi ASTEI03772 I
ASTEI07503 Anopheles stephensi ASTEI07503 I
ASU_00538 Ascaris suum ASU_00538 I
ASU_07782 Ascaris suum ASU_07782 I
A_04980 Schistosoma haematobium A_04980 I
BGIBMGA000670 Bombyx mori BGIBMGA000670 I
BGIBMGA002000 Bombyx mori BGIBMGA002000 I
BGLB000662 Biomphalaria glabrata BGLB000662 I
BGLB009763 Biomphalaria glabrata BGLB009763 I
Bm12516 Brugia malayi Bm12516 I
Bm2078 Brugia malayi Bm2078 I
BTMF_0000437701 Brugia timori BTMF_0000437701 I
BXY_0039800 Bursaphelenchus xylophilus BXY_0039800 I
CapteG224811 Capitella teleta CapteG224811 I
CapteG226190 Capitella teleta CapteG226190 I
CapteG53417 Capitella teleta CapteG53417 I
CBG06024 Caenorhabditis briggsae CBG06024 I
CBG16821 Caenorhabditis briggsae CBG16821 I
CBN02507 Caenorhabditis brenneri CBN02507 I
CBN10913 Caenorhabditis brenneri CBN10913 I
CBN17159 Caenorhabditis brenneri CBN17159 I
Cflo_06716--XP_001121187.1_APIME Camponotus floridanus Cflo_06716--XP_001121187.1_APIME I
Cflo_11610--XP_624042.1_APIME Camponotus floridanus Cflo_11610--XP_624042.1_APIME I
CGI_10027671 Crassostrea gigas CGI_10027671 I
CGI_10028920 Crassostrea gigas CGI_10028920 I
CGI_10028921 Crassostrea gigas CGI_10028921 I
CLEC004804 Cimex lectularius CLEC004804 I
CLEC008419 Cimex lectularius CLEC008419 I
CLEC025112 Cimex lectularius CLEC025112 I
Cmyd_10021619 Chelonia mydas Cmyd_10021619 I
CPIJ012467 Culex quinquefasciatus CPIJ012467 I
CPIJ017884 Culex quinquefasciatus CPIJ017884 I
CpipJ_CPIJ012467 Culex pipiens CpipJ_CPIJ012467 I
CpipJ_CPIJ017884 Culex pipiens CpipJ_CPIJ017884 I
CRE12569 Caenorhabditis remanei CRE12569 I
csin111366 Clonorchis sinensis csin111366 I
D917_07429 Trichinella nativa D917_07429 I
D917_09121 Trichinella nativa D917_09121 I
D918_06154 Trichuris suis D918_06154 I
D918_08129 Trichuris suis D918_08129 I
DAPPUDRAFT_299736 Daphnia pulex DAPPUDRAFT_299736 I
DAPPUDRAFT_299738 Daphnia pulex DAPPUDRAFT_299738 I
DME_0000202701 Dracunculus medinensis DME_0000202701 I
DME_0000705401 Dracunculus medinensis DME_0000705401 I
dsf Drosophila melanogaster FBgn0015381 D
ECANG7_04037 Echinococcus canadensis ECANG7_04037 I
EEL_0000988401 Elaeophora elaphi EEL_0000988401 I
EFV59394 Trichinella spiralis EFV59394 I
EFV59616 Trichinella spiralis EFV59616 I
ENSAMEG00000008117 Ailuropoda melanoleuca ENSAMEG00000008117 I
ENSAPLG00000010675 Anas platyrhynchos ENSAPLG00000010675 I
ENSBTAP00000018594-D1 Bos grunniens ENSBTAP00000018594-D1 I
ENSCSAG00000015143 Chlorocebus sabaeus ENSCSAG00000015143 I
ENSFALG00000011755 Ficedula albicollis ENSFALG00000011755 I
ENSGGOG00000010051 Gorilla gorilla ENSGGOG00000010051 I
ENSGGOG00000027453 Gorilla gorilla ENSGGOG00000027453 I
ENSGMOG00000002967 Gadus morhua ENSGMOG00000002967 I
ENSGMOG00000016036 Gadus morhua ENSGMOG00000016036 I
ENSLACG00000015675 Latimeria chalumnae ENSLACG00000015675 I
ENSLOCG00000013459 Lepisosteus oculatus ENSLOCG00000013459 I
ENSLOCG00000016602 Lepisosteus oculatus ENSLOCG00000016602 I
ENSMPUG00000009805 Mustela putorius furo ENSMPUG00000009805 I
ENSNLEG00000013646 Nomascus leucogenys ENSNLEG00000013646 I
ENSOARG00000010848 Ovis aries ENSOARG00000010848 I
ENSONIG00000013281 Oreochromis niloticus ENSONIG00000013281 I
ENSP00000357979 Macaca fascicularis ENSP00000357979 I
ENSPANG00000016092 Papio anubis ENSPANG00000016092 I
ENSPFOG00000019532 Poecilia formosa ENSPFOG00000019532 I
ENSPPYG00000016893 Pongo abelii ENSPPYG00000016893 I
ENSPSIG00000006035 Pelodiscus sinensis ENSPSIG00000006035 I
ENSSHAG00000009578 Sarcophilus harrisii ENSSHAG00000009578 I
ENSSHAG00000017854 Sarcophilus harrisii ENSSHAG00000017854 I
ENSSTOG00000007248 Ictidomys tridecemlineatus ENSSTOG00000007248 I
ENSXMAG00000003283 Xiphophorus maculatus ENSXMAG00000003283 I
EVEC_0000945501 Enterobius vermicularis EVEC_0000945501 I
e_gw.333.48.1 Branchiostoma floridae e_gw.333.48.1 I
e_gw.356.102.1 Branchiostoma floridae e_gw.356.102.1 I
GA12521 Drosophila pseudoobscura FBgn0072567 I
GA21482 Drosophila pseudoobscura FBgn0081468 I
GB50436 Apis mellifera GB50436 I
GB50458 Apis mellifera GB50458 I
GB52015 Apis mellifera GB52015 I
GD21550 Drosophila simulans FBgn0192976 I
GD23369 Drosophila simulans FBgn0194755 I
GE10907 Drosophila yakuba FBgn0228739 I
GE25723 Drosophila yakuba FBgn0242781 I
genemark-nMf.1.1.scaf00299-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00299-processed-gene-0.6 I
GF15588 Drosophila ananassae FBgn0092613 I
GF22927 Drosophila ananassae FBgn0099921 I
Gfo_R016106 Geospiza fortis Gfo_R016106 I
GG11781 Drosophila erecta FBgn0104076 I
GG25103 Drosophila erecta FBgn0117232 I
GH11011 Drosophila grimshawi FBgn0118492 I
GH14219 Drosophila grimshawi FBgn0121695 I
GI17531 Drosophila mojavensis FBgn0140275 I
GI22125 Drosophila mojavensis FBgn0144854 I
GJ15408 Drosophila virilis FBgn0202602 I
GK14159 Drosophila willistoni FBgn0216165 I
GK14705 Drosophila willistoni FBgn0216711 I
GL13521 Drosophila persimilis FBgn0151126 I
GL19043 Drosophila persimilis FBgn0156644 I
GM18579 Drosophila sechellia FBgn0173485 I
GPLIN_000079400 Globodera pallida GPLIN_000079400 I
GPLIN_000097300 Globodera pallida GPLIN_000097300 I
gw.353.21.1 Branchiostoma floridae gw.353.21.1 I
Hba_13386 Heterorhabditis bacteriophora Hba_13386 I
HCOI00499200 Haemonchus contortus HCOI00499200 I
HCOI00563400 Haemonchus contortus HCOI00563400 I
HDID_0000867201 Hymenolepis diminuta HDID_0000867201 I
HelroG148449 Helobdella robusta HelroG148449 I
HelroG190681 Helobdella robusta HelroG190681 I
HelroG194580 Helobdella robusta HelroG194580 I
HelroG71774 Helobdella robusta HelroG71774 I
HelroG81672 Helobdella robusta HelroG81672 I
HHAL003045-PA Halyomorpha halys HHAL003045-PA I
HHAL007294-PA Halyomorpha halys HHAL007294-PA I
HMEL012854 Heliconius melpomene HMEL012854 I
HMEL013397 Heliconius melpomene HMEL013397 I
HmN_000489600 Hymenolepis microstoma HmN_000489600 I
HNAJ_0000904901 Hymenolepis nana HNAJ_0000904901 I
HPLM_0000273901 Haemonchus placei HPLM_0000273901 I
Hsal_03554--XP_624042.1_APIME Harpegnathos saltator Hsal_03554--XP_624042.1_APIME I
Hsal_06558--XP_001121187.1_APIME Harpegnathos saltator Hsal_06558--XP_001121187.1_APIME I
Hsal_12124--XP_624265.2_APIME Harpegnathos saltator Hsal_12124--XP_624265.2_APIME I
ISCW009256 Ixodes scapularis ISCW009256 I
ISCW010891 Ixodes scapularis ISCW010891 I
KGM_01261 Danaus plexippus KGM_01261 I
KGM_02557 Danaus plexippus KGM_02557 I
KGM_12726 Danaus plexippus KGM_12726 I
KGM_21528 Danaus plexippus KGM_21528 I
L596_g15766 Steinernema carpocapsae L596_g15766 I
L798_02901 Zootermopsis nevadensis L798_02901 I
L889_g31911 Steinernema feltiae L889_g31911 I
L892_g15278 Steinernema scapterisci L892_g15278 I
L893_g4326 Steinernema glaseri L893_g4326 I
L898_g6157 Steinernema monticolum L898_g6157 I
LCUP000197 Lucilia cuprina LCUP000197 I
LCUP005636 Lucilia cuprina LCUP005636 I
LDEC002297 Leptinotarsa decemlineata LDEC002297 I
LDEC003555 Leptinotarsa decemlineata LDEC003555 I
LDEC005682 Leptinotarsa decemlineata LDEC005682 I
LLOJ000605 Lutzomyia longipalpis LLOJ000605 I
LLOJ008560 Lutzomyia longipalpis LLOJ008560 I
LotgiG120392 Lottia gigantea LotgiG120392 I
LotgiG130367 Lottia gigantea LotgiG130367 I
LotgiG135497 Lottia gigantea LotgiG135497 I
MCINX005281 Melitaea cinxia MCINX005281 I
MDOA000688 Musca domestica MDOA000688 I
MDOA002279 Musca domestica MDOA002279 I
MESCA004444 Megaselia scalaris MESCA004444 I
Minc11620 Meloidogyne incognita Minc11620 I
Minc12749 Meloidogyne incognita Minc12749 I
Minc12751 Meloidogyne incognita Minc12751 I
nAv.1.0.1.g01027 Acanthocheilonema viteae nAv.1.0.1.g01027 I
nAv.1.0.1.g01655 Acanthocheilonema viteae nAv.1.0.1.g01655 I
NBR_0002150401 Nippostrongylus brasiliensis NBR_0002150401 I
nDi.2.2.2.g01137 Dirofilaria immitis nDi.2.2.2.g01137 I
nDi.2.2.2.g02808 Dirofilaria immitis nDi.2.2.2.g02808 I
NEMVEDRAFT_v1g114090 Nematostella vectensis NEMVEDRAFT_v1g114090 I
NEMVEDRAFT_v1g132075 Nematostella vectensis NEMVEDRAFT_v1g132075 I
NEMVEDRAFT_v1g99425 Nematostella vectensis NEMVEDRAFT_v1g99425 I
nhr-236 Caenorhabditis elegans WBGene00021417 I
nhr-67 Caenorhabditis elegans WBGene00003657 I
nOo.2.0.1.g00175 Onchocerca ochengi nOo.2.0.1.g00175 I
NR2E1 Anolis carolinensis ENSACAG00000005957 I
NR2E1 Bos taurus ENSBTAG00000013991 I
NR2E1 Canis familiaris ENSCAFG00000003761 I
NR2E1 Choloepus hoffmanni ENSCHOG00000007344 I
NR2E1 Callithrix jacchus ENSCJAG00000005966 I
NR2E1 Cavia porcellus ENSCPOG00000000097 I
nr2e1 Danio rerio ENSDARG00000017107 I
NR2E1 Dasypus novemcinctus ENSDNOG00000015478 I
NR2E1 Equus caballus ENSECAG00000018990 I
NR2E1 Erinaceus europaeus ENSEEUG00000015193 I
NR2E1 Felis catus ENSFCAG00000002255 I
NR2E1 Homo sapiens ENSG00000112333 D
nr2e1 Gasterosteus aculeatus ENSGACG00000008934 I
NR2E1 Gallus gallus ENSGALG00000015305 I
NR2E1 Loxodonta africana ENSLAFG00000013583 I
NR2E1 Myotis lucifugus ENSMLUG00000005543 I
NR2E1 Macaca mulatta ENSMMUG00000023767 I
NR2E1 Monodelphis domestica ENSMODG00000018005 I
Nr2e1 Mus musculus ENSMUSG00000019803 D
NR2E1 Oryctolagus cuniculus ENSOCUG00000005853 I
NR2E1 Otolemur garnettii ENSOGAG00000011992 I
nr2e1 Oryzias latipes ENSORLG00000013426 I
NR2E1 Pan troglodytes ENSPTRG00000018472 I
NR2E1 Pteropus vampyrus ENSPVAG00000001731 I
Nr2e1 Rattus norvegicus ENSRNOG00000050550 I
NR2E1 Sorex araneus ENSSARG00000013555 I
NR2E1 Sus scrofa ENSSSCG00000004384 I
NR2E1 Tupaia belangeri ENSTBEG00000011676 I
NR2E1 Taeniopygia guttata ENSTGUG00000012147 I
nr2e1 Tetraodon nigroviridis ENSTNIG00000012282 I
nr2e1 Takifugu rubripes ENSTRUG00000001893 I
NR2E1 Tursiops truncatus ENSTTRG00000008863 I
nr2e1 Xenopus tropicalis XB-GENE-483554 I
nr2e1.S Xenopus laevis XB-GENE-864991 I
nRc.2.0.1.g16033 Romanomermis culicivorax nRc.2.0.1.g16033 I
NV17364 Nasonia vitripennis NV17364 I
Ocbimv22038770m.g Octopus bimaculoides Ocbimv22038770m.g I
OFLC_0001242901 Onchocerca flexuosa OFLC_0001242901 I
Ogr18563 Ophisaurus gracilis Ogr18563 I
PHUM331460 Pediculus humanus PHUM331460 I
PHUM494010 Pediculus humanus PHUM494010 I
PHUM596250 Pediculus humanus PHUM596250 I
PNRLIKE Aedes aegypti AAEL008043 I
PPA06908 Pristionchus pacificus PPA06908 I
PPAI002209 Phlebotomus papatasi PPAI002209 I
PPAI008488 Phlebotomus papatasi PPAI008488 I
PTRK_0000518200 Parastrongyloides trichosuri PTRK_0000518200 I
Pvit_18941 Pogona vitticeps Pvit_18941 I
PXEA_0002767701 Protopolystoma xenopodis PXEA_0002767701 I
RPRC007025 Rhodnius prolixus RPRC007025 I
RPRC009755 Rhodnius prolixus RPRC009755 I
RSKR_0000792200 Rhabditophanes kr3021 RSKR_0000792200 I
Sakowv30026672m.g Saccoglossus kowalevskii Sakowv30026672m.g I
Sakowv30030751m.g Saccoglossus kowalevskii Sakowv30030751m.g I
Sakowv30031927m.g Saccoglossus kowalevskii Sakowv30031927m.g I
scaffold431-EXSNAP2012.16 Pristionchus exspectatus scaffold431-EXSNAP2012.16 I
SINV14755 Solenopsis invicta SINV14755 I
Sjc_0074110 Schistosoma japonicum Sjc_0074110 I
SMAR006008 Strigamia maritima SMAR006008 I
Smp_150630 Schistosoma mansoni Smp_150630 I
Smp_155250 Schistosoma mansoni Smp_155250 I
SMRZ_0001026501 Schistosoma margrebowiei SMRZ_0001026501 I
SMTD_0001673901 Schistosoma mattheei SMTD_0001673901 I
SMU15014023 Schmidtea mediterranea SMU15014023 I
SMU15015045 Schmidtea mediterranea SMU15015045 I
SMU15026844 Schmidtea mediterranea SMU15026844 I
SMU15032661 Schmidtea mediterranea SMU15032661 I
SMU15038277 Schmidtea mediterranea SMU15038277 I
SPAL_0001263800 Strongyloides papillosus SPAL_0001263800 I
SPU_008936 Strongylocentrotus purpuratus SPU_008936 I
SPU_017375 Strongylocentrotus purpuratus SPU_017375 I
SPU_024486 Strongylocentrotus purpuratus SPU_024486 I
SPU_027487 Strongylocentrotus purpuratus SPU_027487 I
SSLN_0001329801 Schistocephalus solidus SSLN_0001329801 I
SSTP_0000630700 Strongyloides stercoralis SSTP_0000630700 I
SVE_0117200 Strongyloides venezuelensis SVE_0117200 I
TASK_0000491201 Taenia asiatica TASK_0000491201 I
TC000441 Tribolium castaneum TC000441 I
TC001069 Tribolium castaneum TC001069 I
TC030676 Tribolium castaneum TC030676 I
TCLT_0000820901 Thelazia callipaeda TCLT_0000820901 I
TCNE_0000809801 Toxocara canis TCNE_0000809801 I
TCNE_0001744001 Toxocara canis TCNE_0001744001 I
TELCIR_04430 Teladorsagia circumcincta TELCIR_04430 I
tetur01g02690 Tetranychus urticae tetur01g02690 I
tetur03g02550 Tetranychus urticae tetur03g02550 I
tetur08g01210 Tetranychus urticae tetur08g01210 I
tll Drosophila melanogaster FBgn0003720 D
tll Drosophila virilis FBgn0013145 I
TMUE_s0002021300 Trichuris muris TMUE_s0002021300 I
TMUE_s0114001400 Trichuris muris TMUE_s0114001400 I
TRE_0001185401 Trichobilharzia regenti TRE_0001185401 I
TsM_000278500 Taenia solium TsM_000278500 I
TTAC_0000853401 Hydatigera taeniaeformis TTAC_0000853401 I
TTRE_0000057901 Trichuris trichiura TTRE_0000057901 I
TTRE_0000264801 Trichuris trichiura TTRE_0000264801 I
WBGene00241769 Onchocerca volvulus WBGene00241769 I
WUBG_10076 Wuchereria bancrofti WUBG_10076 I
YQE_08225 Dendroctonus ponderosae YQE_08225 I
YQE_10677 Dendroctonus ponderosae YQE_10677 I
YQE_11038 Dendroctonus ponderosae YQE_11038 I