Carubv10009424m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10009424m.g T142711_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.818 0.955
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.818 0.955
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009424m C2H2 ZF 140 161
Carubv10009424m C2H2 ZF 160 187

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001830 Calypte anna Aan_R001830 N 0.000
ENSAMEG00000018175 Ailuropoda melanoleuca ENSAMEG00000018175 N 0.000
ENSCJAG00000006943 Callithrix jacchus ENSCJAG00000006943 N 0.000
ENSCSAG00000008875 Chlorocebus sabaeus ENSCSAG00000008875 N 0.000
ENSFALG00000000117 Ficedula albicollis ENSFALG00000000117 N 0.000
ENSGGOG00000011764 Gorilla gorilla ENSGGOG00000011764 N 0.000
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N 0.000
ENSMLUG00000007019 Myotis lucifugus ENSMLUG00000007019 N 0.000
ENSMMUG00000009047 Macaca mulatta ENSMMUG00000009047 N 0.000
ENSMMUP00000033662 Macaca fascicularis ENSMMUP00000033662 N 0.000
ENSMPUG00000012200 Mustela putorius furo ENSMPUG00000012200 N 0.000
ENSNLEG00000012726 Nomascus leucogenys ENSNLEG00000012726 N 0.000
ENSOARG00000004235 Ovis aries ENSOARG00000004235 N 0.000
ENSP00000389716-D1 Bos grunniens ENSP00000389716-D1 N 0.000
ENSPANG00000007888 Papio anubis ENSPANG00000007888 N 0.000
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N 0.000
ENSSHAG00000013431 Sarcophilus harrisii ENSSHAG00000013431 N 0.000
ENSSTOG00000002697 Ictidomys tridecemlineatus ENSSTOG00000002697 N 0.000
MXD3 Canis familiaris ENSCAFG00000016437 N 0.000
MXD3 Sus scrofa ENSSSCG00000014041 N 0.000
MXD3 Pteropus vampyrus ENSPVAG00000003828 N 0.000
MXD3 Pan troglodytes ENSPTRG00000034491 N 0.000
mxd3 Xenopus tropicalis XB-GENE-867571 N 0.000
MXD3 Tursiops truncatus ENSTTRG00000009572 N 0.000
MXD3 Ochotona princeps ENSOPRG00000002125 N 0.000
MXD3 Oryctolagus cuniculus ENSOCUG00000022519 N 0.000
MXD3 Dasypus novemcinctus ENSDNOG00000017403 N 0.000
MXD3 Equus caballus ENSECAG00000021155 N 0.000
MXD3 Erinaceus europaeus ENSEEUG00000015798 N 0.000
MXD3 Echinops telfairi ENSETEG00000010972 N 0.000
MXD3 Felis catus ENSFCAG00000001533 N 0.000
MXD3 Homo sapiens ENSG00000213347 N 0.000
MXD3 Loxodonta africana ENSLAFG00000021836 N 0.000
MXD3 Monodelphis domestica ENSMODG00000004791 N 0.000
Mxd3 Mus musculus ENSMUSG00000021485 N 0.000
MXD3 Otolemur garnettii ENSOGAG00000032370 N 0.000
mxd3.L Xenopus laevis XB-GENE-867580 N 0.000
MXD4 Monodelphis domestica ENSMODG00000004033 N 0.000
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N 0.000
MXD4 Equus caballus ENSECAG00000002580 N 0.000
Myotis_brandtii_MXD3_10032506 Myotis brandtii Myotis_brandtii_MXD3_10032506 N 0.000
Rab24 Rattus norvegicus ENSRNOG00000016539 N 0.000