Carubv10018142m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10018142m.g T142733_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.827 0.957
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.792 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018142m C2H2 ZF 35 57
Carubv10018142m C2H2 ZF 83 105

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009700 Calypte anna Aan_R009700 I
Afo_R014821 Aptenodytes forsteri Afo_R014821 I
Alligator_sinensis_CCG001947.1 Alligator sinensis Alligator_sinensis_CCG001947.1 I
Brh_R011452 Buceros rhinoceros Brh_R011452 I
Cmyd_10007876 Chelonia mydas Cmyd_10007876 I
ENSAMEG00000011098 Ailuropoda melanoleuca ENSAMEG00000011098 I
ENSAMXG00000006249 Astyanax mexicanus ENSAMXG00000006249 I
ENSAPLG00000011819 Anas platyrhynchos ENSAPLG00000011819 I
ENSCPOG00000002040 Cavia porcellus ENSCPOG00000002040 I
ENSCSAG00000014259 Chlorocebus sabaeus ENSCSAG00000014259 I
ENSFALG00000012253 Ficedula albicollis ENSFALG00000012253 I
ENSGMOG00000007509 Gadus morhua ENSGMOG00000007509 I
ENSLOCG00000016295 Lepisosteus oculatus ENSLOCG00000016295 I
ENSMEUG00000012838 Macropus eugenii ENSMEUG00000012838 I
ENSMICG00000010578 Microcebus murinus ENSMICG00000010578 I
ENSMPUG00000010444 Mustela putorius furo ENSMPUG00000010444 I
ENSNLEG00000015384 Nomascus leucogenys ENSNLEG00000015384 I
ENSOARG00000003148 Ovis aries ENSOARG00000003148 I
ENSONIG00000013371 Oreochromis niloticus ENSONIG00000013371 I
ENSP00000323183 Macaca fascicularis ENSP00000323183 I
ENSP00000323183-D1 Bos grunniens ENSP00000323183-D1 I
ENSPPYG00000017107 Pongo abelii ENSPPYG00000017107 I
ENSPSIG00000018246 Pelodiscus sinensis ENSPSIG00000018246 I
ENSSHAG00000013043 Sarcophilus harrisii ENSSHAG00000013043 I
ENSSTOG00000021611 Ictidomys tridecemlineatus ENSSTOG00000021611 I
Gfo_R006405 Geospiza fortis Gfo_R006405 I
Myotis_brandtii_ZBTB2_10021316 Myotis brandtii Myotis_brandtii_ZBTB2_10021316 I
Ogr17347 Ophisaurus gracilis Ogr17347 I
Pvit_17227 Pogona vitticeps Pvit_17227 I
Tal_R001183 Tyto alba Tal_R001183 I
ZBTB2 Tursiops truncatus ENSTTRG00000014190 I
zbtb2 Xenopus tropicalis XB-GENE-977864 I
ZBTB2 Taeniopygia guttata ENSTGUG00000011276 I
ZBTB2 Sus scrofa ENSSSCG00000004090 I
Zbtb2 Rattus norvegicus ENSRNOG00000019544 I
ZBTB2 Pan troglodytes ENSPTRG00000018712 I
ZBTB2 Anolis carolinensis ENSACAG00000006317 I
ZBTB2 Gorilla gorilla ENSGGOG00000010529 I
ZBTB2 Bos taurus ENSBTAG00000014790 I
ZBTB2 Canis familiaris ENSCAFG00000000422 I
ZBTB2 Callithrix jacchus ENSCJAG00000013393 I
ZBTB2 Dasypus novemcinctus ENSDNOG00000047729 I
Zbtb2 Dipodomys ordii ENSDORG00000013305 I
ZBTB2 Equus caballus ENSECAG00000021762 I
ZBTB2 Felis catus ENSFCAG00000022354 I
ZBTB2 Homo sapiens ENSG00000181472 D
ZBTB2 Gallus gallus ENSGALG00000012966 I
ZBTB2 Procavia capensis ENSPCAG00000013849 I
ZBTB2 Loxodonta africana ENSLAFG00000001805 I
ZBTB2 Meleagris gallopavo ENSMGAG00000012677 I
ZBTB2 Myotis lucifugus ENSMLUG00000001314 I
ZBTB2 Macaca mulatta ENSMMUG00000029475 I
ZBTB2 Monodelphis domestica ENSMODG00000016757 I
Zbtb2 Mus musculus ENSMUSG00000075327 I
ZBTB2 Ornithorhynchus anatinus ENSOANG00000003326 I
ZBTB2 Oryctolagus cuniculus ENSOCUG00000022931 I
ZBTB2 Otolemur garnettii ENSOGAG00000005262 I
zbtb2.L Xenopus laevis XB-GENE-6255749 I
zbtb2b Takifugu rubripes ENSTRUG00000018234 I
zbtb2b Gasterosteus aculeatus ENSGACG00000008691 I
zbtb2b Tetraodon nigroviridis ENSTNIG00000012263 I
zbtb2b Danio rerio ENSDARG00000028086 I