Carubv10024141m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10024141m.g T142741_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.801 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.788 0.826
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.788 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024141m C2H2 ZF 49 71
Carubv10024141m C2H2 ZF 99 121

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

382 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010555 Aedes aegypti AAEL010555 I 0.000
AALB006631 Anopheles albimanus AALB006631 I 0.000
Aan_R009070 Calypte anna Aan_R009070 I 0.000
AARA001097 Anopheles arabiensis AARA001097 I 0.000
AATE001073 Anopheles atroparvus AATE001073 I 0.000
ACHR009884 Anopheles christyi ACHR009884 I 0.000
ACOM033566 Anopheles coluzzii ACOM033566 I 0.000
ACUA020889 Anopheles culicifacies ACUA020889 I 0.000
ACYPI005432 Acyrthosiphon pisum ACYPI005432 I 0.000
ADAC008255 Anopheles darlingi ADAC008255 I 0.000
ADIR000987 Anopheles dirus ADIR000987 I 0.000
AEPI007594 Anopheles epiroticus AEPI007594 I 0.000
AFAF018960 Anopheles farauti AFAF018960 I 0.000
AFUN011560 Anopheles funestus AFUN011560 I 0.000
AGAP000076 Anopheles gambiae AGAP000076 I 0.000
Alligator_sinensis_CCG012315.1 Alligator sinensis Alligator_sinensis_CCG012315.1 I 0.000
AMAM021165 Anopheles maculatus AMAM021165 I 0.000
AMEC015010 Anopheles melas AMEC015010 I 0.000
AMEM008702 Anopheles merus AMEM008702 I 0.000
AMIN002144 Anopheles minimus AMIN002144 I 0.000
ANCCAN_02634 Ancylostoma caninum ANCCAN_02634 I 0.000
ANCCEY_06558 Ancylostoma ceylanicum ANCCEY_06558 I 0.000
AQUA008327 Anopheles quadriannulatus AQUA008327 I 0.000
ASIS002143 Anopheles sinensis ASIS002143 I 0.000
ASTEI06218 Anopheles stephensi ASTEI06218 I 0.000
BGIBMGA001211 Bombyx mori BGIBMGA001211 I 0.000
CapteG165299 Capitella teleta CapteG165299 I 0.000
Cflo_01061--XP_396866.3_APIME Camponotus floridanus Cflo_01061--XP_396866.3_APIME I 0.000
CGI_10004108 Crassostrea gigas CGI_10004108 I 0.000
Cmyd_10008393 Chelonia mydas Cmyd_10008393 I 0.000
CPIJ008607 Culex quinquefasciatus CPIJ008607 I 0.000
CPIJ018167 Culex quinquefasciatus CPIJ018167 I 0.000
CpipJ_CPIJ008607 Culex pipiens CpipJ_CPIJ008607 I 0.000
CpipJ_CPIJ018167 Culex pipiens CpipJ_CPIJ018167 I 0.000
DICVIV_05621 Dictyocaulus viviparus DICVIV_05621 I 0.000
ENSAMEG00000005129 Ailuropoda melanoleuca ENSAMEG00000005129 I 0.000
ENSAMXG00000009016 Astyanax mexicanus ENSAMXG00000009016 I 0.000
ENSCSAG00000008412 Chlorocebus sabaeus ENSCSAG00000008412 I 0.000
ENSFALG00000013762 Ficedula albicollis ENSFALG00000013762 I 0.000
ENSLACG00000013149 Latimeria chalumnae ENSLACG00000013149 I 0.000
ENSLOCG00000008766 Lepisosteus oculatus ENSLOCG00000008766 I 0.000
ENSMEUG00000001306 Macropus eugenii ENSMEUG00000001306 I 0.000
ENSMPUG00000000024 Mustela putorius furo ENSMPUG00000000024 I 0.000
ENSNLEG00000013625 Nomascus leucogenys ENSNLEG00000013625 I 0.000
ENSOARG00000001504 Ovis aries ENSOARG00000001504 I 0.000
ENSONIG00000002304 Oreochromis niloticus ENSONIG00000002304 I 0.000
ENSP00000348069 Macaca fascicularis ENSP00000348069 I 0.000
ENSPANG00000023675 Papio anubis ENSPANG00000023675 I 0.000
ENSPFOG00000010306 Poecilia formosa ENSPFOG00000010306 I 0.000
ENSPPYG00000008037 Pongo abelii ENSPPYG00000008037 I 0.000
ENSPSIG00000005996 Pelodiscus sinensis ENSPSIG00000005996 I 0.000
ENSSHAG00000018607 Sarcophilus harrisii ENSSHAG00000018607 I 0.000
ENSSSCG00000023124 Sus scrofa ENSSSCG00000023124 I 0.000
ENSSTOG00000014939 Ictidomys tridecemlineatus ENSSTOG00000014939 I 0.000
ENSXMAG00000014774 Xiphophorus maculatus ENSXMAG00000014774 I 0.000
GB54953 Apis mellifera GB54953 I 0.000
Gfo_R006283 Geospiza fortis Gfo_R006283 I 0.000
HCOI01299300 Haemonchus contortus HCOI01299300 I 0.000
HCOI02041100 Haemonchus contortus HCOI02041100 I 0.000
HelroG66987 Helobdella robusta HelroG66987 I 0.000
HHAL003331-PA Halyomorpha halys HHAL003331-PA I 0.000
HLH106 Drosophila melanogaster FBgn0261283 D 0.000
HMEL008680 Heliconius melpomene HMEL008680 I 0.000
Hsal_02671--XP_396866.3_APIME Harpegnathos saltator Hsal_02671--XP_396866.3_APIME I 0.000
KGM_21476 Danaus plexippus KGM_21476 I 0.000
L798_14382 Zootermopsis nevadensis L798_14382 I 0.000
LCUP004742 Lucilia cuprina LCUP004742 I 0.000
LotgiG224211 Lottia gigantea LotgiG224211 I 0.000
MDOA000648 Musca domestica MDOA000648 I 0.000
Myotis_brandtii_SREBF1_10023215 Myotis brandtii Myotis_brandtii_SREBF1_10023215 I 0.000
NBR_0002173001 Nippostrongylus brasiliensis NBR_0002173001 I 0.000
NECAME_14255 Necator americanus NECAME_14255 I 0.000
NV10553 Nasonia vitripennis NV10553 I 0.000
Ogr11708 Ophisaurus gracilis Ogr11708 I 0.000
PPAI004928 Phlebotomus papatasi PPAI004928 I 0.000
Pvit_05020 Pogona vitticeps Pvit_05020 I 0.000
RPRC014734 Rhodnius prolixus RPRC014734 I 0.000
SINV16629 Solenopsis invicta SINV16629 I 0.000
SMAR011485 Strigamia maritima SMAR011485 I 0.000
SREBF1 Anolis carolinensis ENSACAG00000001181 I 0.000
SREBF1 Bos taurus ENSBTAG00000007884 I 0.000
SREBF1 Canis familiaris ENSCAFG00000018436 I 0.000
SREBF1 Callithrix jacchus ENSCJAG00000008953 I 0.000
SREBF1 Cavia porcellus ENSCPOG00000002439 I 0.000
srebf1 Danio rerio ENSDARG00000067607 I 0.000
Srebf1 Dipodomys ordii ENSDORG00000012333 I 0.000
SREBF1 Equus caballus ENSECAG00000019802 I 0.000
SREBF1 Echinops telfairi ENSETEG00000004179 I 0.000
SREBF1 Felis catus ENSFCAG00000001983 I 0.000
SREBF1 Homo sapiens ENSG00000072310 D 0.000
srebf1 Gasterosteus aculeatus ENSGACG00000012064 I 0.000
SREBF1 Gallus gallus ENSGALG00000027188 I 0.000
SREBF1 Gorilla gorilla ENSGGOG00000002713 I 0.000
SREBF1 Loxodonta africana ENSLAFG00000021644 I 0.000
SREBF1 Microcebus murinus ENSMICG00000012535 I 0.000
SREBF1 Macaca mulatta ENSMMUG00000023375 I 0.000
SREBF1 Monodelphis domestica ENSMODG00000014074 I 0.000
Srebf1 Mus musculus ENSMUSG00000020538 D 0.000
SREBF1 Ornithorhynchus anatinus ENSOANG00000012278 I 0.000
SREBF1 Otolemur garnettii ENSOGAG00000002910 I 0.000
SREBF1 Ochotona princeps ENSOPRG00000015069 I 0.000
srebf1 Oryzias latipes ENSORLG00000009437 I 0.000
SREBF1 Procavia capensis ENSPCAG00000014903 I 0.000
SREBF1 Pteropus vampyrus ENSPVAG00000005765 I 0.000
Srebf1 Rattus norvegicus ENSRNOG00000003463 I 0.000
SREBF1 Taeniopygia guttata ENSTGUG00000007313 I 0.000
srebf1 Tetraodon nigroviridis ENSTNIG00000011957 I 0.000
srebf1 Xenopus tropicalis XB-GENE-987572 I 0.000
SREBP Drosophila pseudoobscura FBgn0081122 I 0.000
SREBP Drosophila ananassae FBgn0100584 I 0.000
SREBP Drosophila erecta FBgn0108291 I 0.000
SREBP Drosophila grimshawi FBgn0122129 I 0.000
SREBP Drosophila mojavensis FBgn0134398 I 0.000
SREBP Drosophila persimilis FBgn0153336 I 0.000
SREBP Drosophila sechellia FBgn0174544 I 0.000
SREBP Drosophila simulans FBgn0186498 I 0.000
SREBP Drosophila virilis FBgn0198580 I 0.000
SREBP Drosophila willistoni FBgn0219495 I 0.000
SREBP Drosophila yakuba FBgn0236960 I 0.000
TC007163 Tribolium castaneum TC007163 I 0.000
TELCIR_06021 Teladorsagia circumcincta TELCIR_06021 I 0.000
TELCIR_07862 Teladorsagia circumcincta TELCIR_07862 I 0.000
tetur08g03870 Tetranychus urticae tetur08g03870 I 0.000
XP_002944649 Xenopus tropicalis XP_002944649 I 0.000
YQE_07365 Dendroctonus ponderosae YQE_07365 I 0.000