Carubv10024179m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10024179m.g T142742_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.787 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.786 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.786 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.776 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.767 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.756 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.756 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024179m C2H2 ZF 48 70
Carubv10024179m C2H2 ZF 92 114

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
22312_YPR008W Saccharomyces mikatae 22312_YPR008W I 0.000
23384_YPR008W Saccharomyces paradoxus 23384_YPR008W I 0.000
25568_YPR008W Saccharomyces bayanus 25568_YPR008W I 0.000
AACERI_AaceriAEL295C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL295C I 0.000
AGOS_AEL295C Ashbya gossypii AGOS_AEL295C I 0.000
BN7_4399 Wickerhamomyces ciferrii BN7_4399 I 0.000
CAGL0L09339g Candida glabrata CAGL0L09339g I 0.000
CANTEDRAFT_114577 Candida tenuis CANTEDRAFT_114577 I 0.000
CaO19.12468 Candida albicans CaO19.12468 I 0.000
CaO19.5001 Candida albicans CaO19.5001 I 0.000
CD36_12620 Candida dubliniensis CD36_12620 I 0.000
CLUG_03246 Clavispora lusitaniae CLUG_03246 I 0.000
CORT_0D01560 Candida orthopsilosis CORT_0D01560 I 0.000
CPAG_03050 Candida parapsilosis CPAG_03050 I 0.000
CTRG_03632 Candida tropicalis CTRG_03632 I 0.000
CUP2 Saccharomyces cerevisiae YGL166W D 0.000
DEHA2D05500g Debaryomyces hansenii DEHA2D05500g I 0.000
Ecym_6116 Eremothecium cymbalariae Ecym_6116 I 0.000
estExt_fgenesh1_pg.C_chr_1.20386 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20386 I 0.000
G210_3644 Candida maltosa G210_3644 I 0.000
GNLVRS01_PISO0A06138g Millerozyma farinosa GNLVRS01_PISO0A06138g I 0.000
GNLVRS01_PISO0B06205g Millerozyma farinosa GNLVRS01_PISO0B06205g I 0.000
HAA1 Saccharomyces cerevisiae YPR008W D 0.000
HPODL_01037 Ogataea parapolymorpha HPODL_01037 I 0.000
JL09_g2035 Pichia kudriavzevii JL09_g2035 I 0.000
JL09_g5487 Pichia kudriavzevii JL09_g5487 I 0.000
KAFR_0B01950 Kazachstania africana KAFR_0B01950 I 0.000
KLLA0_A03047g Kluyveromyces lactis KLLA0_A03047g I 0.000
KLTH0G16984g Lachancea thermotolerans KLTH0G16984g I 0.000
KLTH0G16984g Kluyveromyces thermotolerans KLTH0G16984g I 0.000
KNAG_0D02340 Kazachstania naganishii KNAG_0D02340 I 0.000
Kpol_467p5 Vanderwaltozyma polyspora Kpol_467p5 I 0.000
Kpol_541p30 Vanderwaltozyma polyspora Kpol_541p30 I 0.000
KUCA_T00002063001 Kuraishia capsulata KUCA_T00002063001 I 0.000
Kwal_1543 Kluyveromyces waltii Kwal_1543 I 0.000
LALA0_S09e06546g Lachancea lanzarotensis LALA0_S09e06546g I 0.000
LELG_03555 Lodderomyces elongisporus LELG_03555 I 0.000
NCAS_0B05730 Naumovozyma castellii NCAS_0B05730 I 0.000
NDAI_0B03070 Naumovozyma dairenensis NDAI_0B03070 I 0.000
PAS_chr3_0232 Komagataella pastoris PAS_chr3_0232 I 0.000
PGUG_05595 Candida guilliermondii PGUG_05595 I 0.000
PGUG_05595 Meyerozyma guilliermondii PGUG_05595 I 0.000
PICST_66716 Scheffersomyces stipitis PICST_66716 I 0.000
SAKL0B03344g Lachancea kluyveri SAKL0B03344g I 0.000
Scas_Contig710.11 Saccharomyces castellii Scas_Contig710.11 I 0.000
SKUD_166403 Saccharomyces kudriavzevii SKUD_166403 I 0.000
SU7_3622 Saccharomyces arboricola SU7_3622 I 0.000
TBLA_0C00170 Tetrapisispora blattae TBLA_0C00170 I 0.000
TDEL_0C01350 Torulaspora delbrueckii TDEL_0C01350 I 0.000
TPHA_0D00690 Tetrapisispora phaffii TPHA_0D00690 I 0.000
XP_002492448.1 Pichia pastoris XP_002492448.1 I 0.000
YALI0_B08206g Yarrowia lipolytica YALI0_B08206g I 0.000
ZBAI_01494 Zygosaccharomyces bailii ZBAI_01494 I 0.000
ZYRO0F04862g Zygosaccharomyces rouxii ZYRO0F04862g I 0.000