Carubv10025077m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10025077m.g T142744_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.805 0.870
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.805 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025077m C2H2 ZF 221 243

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BOTBODRAFT_56781 Botryobasidium botryosum BOTBODRAFT_56781 N
FIBRA_08135 Fibroporia radiculosa FIBRA_08135 N