gene00618-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene00618-v1.0-hybrid T142935_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.932
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.932
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna00618.1-v1.0-hybrid C2H2 ZF 277 298
mrna00618.1-v1.0-hybrid C2H2 ZF 297 324

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CCM_07503 Cordyceps militaris CCM_07503 N
CFIO01_13578 Colletotrichum fioriniae CFIO01_13578 N
CGGC5_547 Colletotrichum gloeosporioides CGGC5_547 N
Cob_10044 Colletotrichum orbiculare Cob_10044 N
CPUR_04956 Claviceps purpurea CPUR_04956 N
CSUB01_05031 Colletotrichum sublineola CSUB01_05031 N
CTHT_0022700 Chaetomium thermophilum CTHT_0022700 N
estExt_fgenesh1_pg.C_10747 Cryphonectria parasitica estExt_fgenesh1_pg.C_10747 N
estExt_Genewise1Plus.C_sca_10_chr8_2_00572 Nectria haematococca estExt_Genewise1Plus.C_sca_10_chr8_2_00572 N
F503_04396 Ophiostoma piceae uamh F503_04396 N
FFUJ_08604 Fusarium fujikuroi FFUJ_08604 N
FGRRES_12742 Fusarium graminearum FGRRES_12742 N
FOXG_09425 Fusarium oxysporum FOXG_09425 N
FPSE_03532 Fusarium pseudograminearum FPSE_03532 N
FVEG_07057 Fusarium verticillioides FVEG_07057 N
GGTG_09471 Gaeumannomyces graminis GGTG_09471 N
GLRG_00168 Colletotrichum graminicola GLRG_00168 N
HMPREF1624_03120 Sporothrix schenckii HMPREF1624_03120 N
MAJ_03545 Metarhizium majus MAJ_03545 N
MANI_026245 Metarhizium anisopliae MANI_026245 N
MAPG_03301 Magnaporthe poae MAPG_03301 N
MBR_07611 Metarhizium brunneum MBR_07611 N
MGU_03902 Metarhizium guizhouense MGU_03902 N
NCU16667 Neurospora crassa NCU16667 N
NechaG71135 Fusarium solani NechaG71135 N
PODANS_7_2610 Podospora anserina PODANS_7_2610 N
S40285_00214 Stachybotrys chlorohalonata S40285_00214 N
S40288_02231 Stachybotrys chartarum S40288_02231 N
SPBR_01267 Sporothrix brasiliensis SPBR_01267 N
THITE_2155541 Thielavia terrestris THITE_2155541 N
TRIATDRAFT_52152 Trichoderma atroviride TRIATDRAFT_52152 N
UV8b_1336 Ustilaginoidea virens UV8b_1336 N
VDBG_06797 Verticillium alfalfae VDBG_06797 N
VDBG_06797 Verticillium albo atrum VDBG_06797 N
VHEMI09995 Torrubiella hemipterigena VHEMI09995 N
X797_003277 Metarhizium robertsii X797_003277 N