Gorai.006G176000 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G176000 T143028_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.804
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.787 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.787 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.764 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G176000.1 C2H2 ZF 39 61
Gorai.006G176000.1 C2H2 ZF 87 109

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000575701 Angiostrongylus cantonensis ACAC_0000575701 I
ANCCAN_20244 Ancylostoma caninum ANCCAN_20244 N
ANCDUO_04672 Ancylostoma duodenale ANCDUO_04672 N
CGOC_0001417301 Cylicostephanus goldi CGOC_0001417301 N
DICVIV_06590 Dictyocaulus viviparus DICVIV_06590 I
HCOI00642400 Haemonchus contortus HCOI00642400 I
HPLM_0001847601 Haemonchus placei HPLM_0001847601 I
NBR_0000547701 Nippostrongylus brasiliensis NBR_0000547701 N
NECAME_13995 Necator americanus NECAME_13995 N
OESDEN_00841 Oesophagostomum dentatum OESDEN_00841 N
OESDEN_22889 Oesophagostomum dentatum OESDEN_22889 N
SVUK_0001876601 Strongylus vulgaris SVUK_0001876601 N
TELCIR_11825 Teladorsagia circumcincta TELCIR_11825 I