Lus10024428.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10024428.g T143127_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.791 0.804
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.791 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.762 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10024428 C2H2 ZF 49 71
Lus10024428 C2H2 ZF 100 122

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

386 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001925 Aedes aegypti AAEL001925 N 0.000
AALB005658 Anopheles albimanus AALB005658 N 0.000
AARA007828 Anopheles arabiensis AARA007828 N 0.000
AATE002182 Anopheles atroparvus AATE002182 N 0.000
ACEP16593 Atta cephalotes ACEP16593 N 0.000
ACHR006701 Anopheles christyi ACHR006701 N 0.000
ACOM025371 Anopheles coluzzii ACOM025371 N 0.000
ACYPI001044 Acyrthosiphon pisum ACYPI001044 N 0.000
ADIR007954 Anopheles dirus ADIR007954 N 0.000
AEPI005047 Anopheles epiroticus AEPI005047 N 0.000
AFAF017055 Anopheles farauti AFAF017055 N 0.000
AFUN003930 Anopheles funestus AFUN003930 N 0.000
AGAP007178 Anopheles gambiae AGAP007178 N 0.000
AMEC019779 Anopheles melas AMEC019779 N 0.000
AMEM017655 Anopheles merus AMEM017655 N 0.000
AMIN010644 Anopheles minimus AMIN010644 N 0.000
AQUA002099 Anopheles quadriannulatus AQUA002099 N 0.000
ASIS021701 Anopheles sinensis ASIS021701 N 0.000
ASTEI02720 Anopheles stephensi ASTEI02720 N 0.000
BGIBMGA012698 Bombyx mori BGIBMGA012698 N 0.000
Cflo_07298--XP_396330.3_APIME Camponotus floridanus Cflo_07298--XP_396330.3_APIME N 0.000
CLEC006839 Cimex lectularius CLEC006839 N 0.000
CPIJ009909 Culex quinquefasciatus CPIJ009909 N 0.000
CpipJ_CPIJ009909 Culex pipiens CpipJ_CPIJ009909 N 0.000
DAPPUDRAFT_109629 Daphnia pulex DAPPUDRAFT_109629 N 0.000
GA28320 Drosophila pseudoobscura FBgn0249682 N 0.000
GB52555 Apis mellifera GB52555 N 0.000
GD13370 Drosophila simulans FBgn0185084 N 0.000
GE21684 Drosophila yakuba FBgn0238932 N 0.000
GF10235 Drosophila ananassae FBgn0087276 N 0.000
GG14496 Drosophila erecta FBgn0106755 N 0.000
GH14579 Drosophila grimshawi FBgn0122055 N 0.000
GI13904 Drosophila mojavensis FBgn0136658 N 0.000
GJ11760 Drosophila virilis FBgn0199014 N 0.000
GK17628 Drosophila willistoni FBgn0219627 N 0.000
GL22430 Drosophila persimilis FBgn0160022 N 0.000
GM14099 Drosophila sechellia FBgn0169028 N 0.000
HHAL006470-PA Halyomorpha halys HHAL006470-PA N 0.000
HMEL013359 Heliconius melpomene HMEL013359 N 0.000
Hsal_06375--XP_396330.3_APIME Harpegnathos saltator Hsal_06375--XP_396330.3_APIME N 0.000
ISCW023645 Ixodes scapularis ISCW023645 N 0.000
KGM_05165 Danaus plexippus KGM_05165 N 0.000
L798_15814 Zootermopsis nevadensis L798_15814 N 0.000
LCUP015162 Lucilia cuprina LCUP015162 N 0.000
LDEC020316 Leptinotarsa decemlineata LDEC020316 N 0.000
MDOA007787 Musca domestica MDOA007787 N 0.000
MESCA007735 Megaselia scalaris MESCA007735 N 0.000
NV14212 Nasonia vitripennis NV14212 N 0.000
PHUM058930 Pediculus humanus PHUM058930 N 0.000
RPRC001841 Rhodnius prolixus RPRC001841 N 0.000
SINV21580 Solenopsis invicta SINV21580 N 0.000
TC013796 Tribolium castaneum TC013796 N 0.000
Tet Drosophila melanogaster FBgn0263392 N 0.000
YQE_04891 Dendroctonus ponderosae YQE_04891 N 0.000