MDP0000170739 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000170739 T143182_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.776 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000170739 C2H2 ZF 178 200
MDP0000170739 C2H2 ZF 229 251

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
11010_YIL036W Saccharomyces mikatae 11010_YIL036W I 0.000
11119_YIL036W Saccharomyces paradoxus 11119_YIL036W I 0.000
11457_YIL036W Saccharomyces bayanus 11457_YIL036W I 0.000
6047_YER045C Saccharomyces mikatae 6047_YER045C I 0.000
6202_YER045C Saccharomyces paradoxus 6202_YER045C I 0.000
6282_YER045C Saccharomyces bayanus 6282_YER045C I 0.000
AACERI_AaceriADL104W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL104W I 0.000
ACA1 Saccharomyces cerevisiae YER045C D 0.000
AGOS_ADL104W Ashbya gossypii AGOS_ADL104W I 0.000
CAGL0I05170g Candida glabrata CAGL0I05170g I 0.000
CANTEDRAFT_114387 Candida tenuis CANTEDRAFT_114387 I 0.000
CST6 Saccharomyces cerevisiae YIL036W D 0.000
Ecym_4366 Eremothecium cymbalariae Ecym_4366 I 0.000
HPODL_04325 Ogataea parapolymorpha HPODL_04325 I 0.000
KAFR_0A02550 Kazachstania africana KAFR_0A02550 I 0.000
KLLA0_E04269g Kluyveromyces lactis KLLA0_E04269g I 0.000
KLTH0A03586g Kluyveromyces thermotolerans KLTH0A03586g I 0.000
KLTH0A03586g Lachancea thermotolerans KLTH0A03586g I 0.000
KNAG_0H02870 Kazachstania naganishii KNAG_0H02870 I 0.000
Kpol_1070p29 Vanderwaltozyma polyspora Kpol_1070p29 I 0.000
Kwal_18103 Kluyveromyces waltii Kwal_18103 I 0.000
LALA0_S08e03466g Lachancea lanzarotensis LALA0_S08e03466g I 0.000
NCAS_0A13330 Naumovozyma castellii NCAS_0A13330 I 0.000
PAS_chr3_0135 Komagataella pastoris PAS_chr3_0135 I 0.000
SAKL0F07898g Lachancea kluyveri SAKL0F07898g I 0.000
Scas_Contig704.49 Saccharomyces castellii Scas_Contig704.49 I 0.000
SPAPADRAFT_130700 Spathaspora passalidarum SPAPADRAFT_130700 I 0.000
TBLA_0D04750 Tetrapisispora blattae TBLA_0D04750 I 0.000
TDEL_0H02360 Torulaspora delbrueckii TDEL_0H02360 I 0.000
TPHA_0C01320 Tetrapisispora phaffii TPHA_0C01320 I 0.000
XP_002492343.1 Pichia pastoris XP_002492343.1 I 0.000
ZBAI_00866 Zygosaccharomyces bailii ZBAI_00866 I 0.000
ZBAI_06176 Zygosaccharomyces bailii ZBAI_06176 I 0.000
ZYRO0D16214g Zygosaccharomyces rouxii ZYRO0D16214g I 0.000