Pavir.Ia03263 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ia03263 T143380_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03263.1.p C2H2 ZF 36 58

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG016908.1 Alligator sinensis Alligator_sinensis_CCG016908.1 I 0.000
ATF6 Felis catus ENSFCAG00000023651 I 0.000
ATF6 Otolemur garnettii ENSOGAG00000001917 I 0.000
ATF6 Oryctolagus cuniculus ENSOCUG00000007930 I 0.000
ATF6 Pan troglodytes ENSPTRG00000001596 I 0.000
Atf6 Rattus norvegicus ENSRNOG00000024632 I 0.000
Atf6 Mus musculus ENSMUSG00000026663 I 0.000
ATF6 Sus scrofa ENSSSCG00000006346 I 0.000
ATF6 Monodelphis domestica ENSMODG00000000980 I 0.000
ATF6 Macaca mulatta ENSMMUG00000004049 I 0.000
ATF6 Microcebus murinus ENSMICG00000000038 I 0.000
ATF6 Tupaia belangeri ENSTBEG00000015845 I 0.000
ATF6 Tursiops truncatus ENSTTRG00000008508 I 0.000
ATF6 Loxodonta africana ENSLAFG00000003622 I 0.000
ATF6 Homo sapiens ENSG00000118217 D 0.000
ATF6 Echinops telfairi ENSETEG00000004183 I 0.000
ATF6 Erinaceus europaeus ENSEEUG00000000007 I 0.000
ATF6 Equus caballus ENSECAG00000022307 I 0.000
ATF6 Vicugna pacos ENSVPAG00000004732 I 0.000
atf6 Danio rerio ENSDARG00000012656 I 0.000
ATF6 Cavia porcellus ENSCPOG00000010325 I 0.000
ATF6 Callithrix jacchus ENSCJAG00000004572 I 0.000
ATF6 Choloepus hoffmanni ENSCHOG00000009031 I 0.000
ATF6 Canis familiaris ENSCAFG00000013068 I 0.000
ATF6 Bos taurus ENSBTAG00000005227 I 0.000
atf6 Xenopus tropicalis XB-GENE-983814 I 0.000
atf6.S Xenopus laevis XB-GENE-983817 I 0.000
ENSAMEG00000001631 Ailuropoda melanoleuca ENSAMEG00000001631 I 0.000
ENSAMXG00000010343 Astyanax mexicanus ENSAMXG00000010343 I 0.000
ENSCSAG00000002721 Chlorocebus sabaeus ENSCSAG00000002721 I 0.000
ENSDNOG00000008226 Dasypus novemcinctus ENSDNOG00000008226 I 0.000
ENSLOCG00000001278 Lepisosteus oculatus ENSLOCG00000001278 I 0.000
ENSMEUG00000008122 Macropus eugenii ENSMEUG00000008122 I 0.000
ENSMPUG00000003493 Mustela putorius furo ENSMPUG00000003493 I 0.000
ENSNLEG00000014528 Nomascus leucogenys ENSNLEG00000014528 I 0.000
ENSOARG00000010418 Ovis aries ENSOARG00000010418 I 0.000
ENSP00000356919 Macaca fascicularis ENSP00000356919 I 0.000
ENSP00000356919-D1 Bos grunniens ENSP00000356919-D1 I 0.000
ENSPANG00000021910 Papio anubis ENSPANG00000021910 I 0.000
ENSPPYG00000000589 Pongo abelii ENSPPYG00000000589 I 0.000
ENSPSIG00000016522 Pelodiscus sinensis ENSPSIG00000016522 I 0.000
ENSSHAG00000005867 Sarcophilus harrisii ENSSHAG00000005867 I 0.000
ENSTSYG00000002035 Tarsius syrichta ENSTSYG00000002035 I 0.000
Myotis_brandtii_ATF6_10024274 Myotis brandtii Myotis_brandtii_ATF6_10024274 I 0.000