Pavir.J00893 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J00893 T143396_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.756 0.739
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.756 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00893.1.p C2H2 ZF 48 75
Pavir.J00893.1.p C2H2 ZF 107 129

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

327 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA026216 Oryza indica BGIOSGA026216 I 0.000
BRADI1G20210 Brachypodium distachyon BRADI1G20210 I 0.000
BRADI1G61477 Brachypodium distachyon BRADI1G61477 I 0.000
F775_06570 Aegilops tauschii F775_06570 I 0.000
GRMZM2G026417 Zea mays GRMZM2G026417 I 0.000
GRMZM2G030458 Zea mays GRMZM2G030458 I 0.000
GRMZM2G075122 Zea mays GRMZM2G075122 I 0.000
GRMZM2G082318 Zea mays GRMZM2G082318 I 0.000
LPERR07G20450 Leersia perrieri LPERR07G20450 I 0.000
MLOC_10638 Hordeum vulgare MLOC_10638 I 0.000
OB07G29080 Oryza brachyantha OB07G29080 I 0.000
OBART07G23470 Oryza barthii OBART07G23470 I 0.000
OGLUM03G19400 Oryza glumaepatula OGLUM03G19400 I 0.000
OGLUM07G23550 Oryza glumaepatula OGLUM07G23550 I 0.000
OMERI03G17110 Oryza meridionalis OMERI03G17110 I 0.000
OMERI07G19920 Oryza meridionalis OMERI07G19920 I 0.000
ONIVA04G28640 Oryza nivara ONIVA04G28640 I 0.000
ONIVA07G23260 Oryza nivara ONIVA07G23260 I 0.000
OPUNC03G17850 Oryza punctata OPUNC03G17850 I 0.000
OPUNC07G22140 Oryza punctata OPUNC07G22140 I 0.000
ORGLA03G0177400 Oryza glaberrima ORGLA03G0177400 I 0.000
ORGLA07G0264000 Oryza glaberrima ORGLA07G0264000 I 0.000
ORUFI03G19470 Oryza rufipogon ORUFI03G19470 I 0.000
ORUFI07G24680 Oryza rufipogon ORUFI07G24680 I 0.000
OS03G0370250 Oryza sativa OS03G0370250 D 0.000
OS07G0636100 Oryza sativa OS07G0636100 I 0.000
Pavir.Bb03462 Panicum virgatum Pavir.Bb03462 I 0.000
Pavir.J23796 Panicum virgatum Pavir.J23796 I 0.000
Sb01g034370 Sorghum bicolor Sb01g034370 I 0.000
Sb02g040550 Sorghum bicolor Sb02g040550 I 0.000
Si030239m.g Setaria italica Si030239m.g I 0.000
Traes_2AS_8C5E619C6 Triticum aestivum Traes_2AS_8C5E619C6 I 0.000
Traes_2BS_EEE045515 Triticum aestivum Traes_2BS_EEE045515 I 0.000
Traes_2DS_6BAF1825F Triticum aestivum Traes_2DS_6BAF1825F I 0.000
Traes_4AS_928691B39 Triticum aestivum Traes_4AS_928691B39 I 0.000
Traes_4BS_96AE357C6 Triticum aestivum Traes_4BS_96AE357C6 I 0.000
Traes_4DL_21C202E37 Triticum aestivum Traes_4DL_21C202E37 I 0.000
TRIUR3_32773 Triticum urartu TRIUR3_32773 I 0.000