Pavir.J14338 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J14338 T143416_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.780 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.779 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.779 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.769 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.769 0.696
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.759 0.674
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.757 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J14338.1.p C2H2 ZF 63 85
Pavir.J14338.1.p C2H2 ZF 111 133

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

401 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009982 Ailuropoda melanoleuca ENSAMEG00000009982 N 0.000
ENSBTAP00000026370-D1 Bos grunniens ENSBTAP00000026370-D1 N 0.000
ENSCSAG00000000939 Chlorocebus sabaeus ENSCSAG00000000939 N 0.000
ENSMEUG00000004978 Macropus eugenii ENSMEUG00000004978 N 0.000
ENSMLUG00000012056 Myotis lucifugus ENSMLUG00000012056 N 0.000
ENSMLUG00000027396 Myotis lucifugus ENSMLUG00000027396 N 0.000
ENSMPUG00000015840 Mustela putorius furo ENSMPUG00000015840 N 0.000
ENSOARG00000006636 Ovis aries ENSOARG00000006636 N 0.000
ENSP00000288955 Macaca fascicularis ENSP00000288955 N 0.000
ENSPANG00000024748 Papio anubis ENSPANG00000024748 N 0.000
ENSPPYG00000001721 Pongo abelii ENSPPYG00000001721 N 0.000
ENSSHAG00000008311 Sarcophilus harrisii ENSSHAG00000008311 N 0.000
Grhl3 Rattus norvegicus ENSRNOG00000029427 N 0.000
GRHL3 Pteropus vampyrus ENSPVAG00000005827 N 0.000
GRHL3 Pan troglodytes ENSPTRG00000000344 N 0.000
GRHL3 Procavia capensis ENSPCAG00000011355 N 0.000
GRHL3 Ochotona princeps ENSOPRG00000003928 N 0.000
GRHL3 Otolemur garnettii ENSOGAG00000011027 N 0.000
GRHL3 Sus scrofa ENSSSCG00000003539 N 0.000
GRHL3 Oryctolagus cuniculus ENSOCUG00000013357 N 0.000
GRHL3 Tursiops truncatus ENSTTRG00000016160 N 0.000
GRHL3 Ornithorhynchus anatinus ENSOANG00000002207 N 0.000
GRHL3 Bos taurus ENSBTAG00000019791 N 0.000
GRHL3 Monodelphis domestica ENSMODG00000013064 N 0.000
GRHL3 Canis familiaris ENSCAFG00000012994 N 0.000
GRHL3 Choloepus hoffmanni ENSCHOG00000000305 N 0.000
GRHL3 Callithrix jacchus ENSCJAG00000020858 N 0.000
GRHL3 Cavia porcellus ENSCPOG00000008841 N 0.000
GRHL3 Dasypus novemcinctus ENSDNOG00000013939 N 0.000
Grhl3 Dipodomys ordii ENSDORG00000001381 N 0.000
GRHL3 Equus caballus ENSECAG00000009866 N 0.000
GRHL3 Erinaceus europaeus ENSEEUG00000014202 N 0.000
GRHL3 Echinops telfairi ENSETEG00000001594 N 0.000
GRHL3 Felis catus ENSFCAG00000019048 N 0.000
GRHL3 Homo sapiens ENSG00000158055 N 0.000
GRHL3 Gorilla gorilla ENSGGOG00000001792 N 0.000
GRHL3 Loxodonta africana ENSLAFG00000001618 N 0.000
GRHL3 Microcebus murinus ENSMICG00000000542 N 0.000
GRHL3 Macaca mulatta ENSMMUG00000004463 N 0.000
Grhl3 Mus musculus ENSMUSG00000037188 N 0.000
Myotis_brandtii_Grhl3_10029711 Myotis brandtii Myotis_brandtii_Grhl3_10029711 N 0.000