PK17145.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK17145.1 T144906_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.783 0.907
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.783 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK17145.1 C2H2 ZF 158 179
PK17145.1 C2H2 ZF 178 204

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCDUO_19967 Ancylostoma duodenale ANCDUO_19967 N
ANCDUO_21567 Ancylostoma duodenale ANCDUO_21567 N
ASU_12719 Ascaris suum ASU_12719 N
BTMF_0001429501 Brugia timori BTMF_0001429501 N
BXY_0574800 Bursaphelenchus xylophilus BXY_0574800 N
CBG02231 Caenorhabditis briggsae CBG02231 N
CBN00758 Caenorhabditis brenneri CBN00758 N
CBN06012 Caenorhabditis brenneri CBN06012 N
CJA12147 Caenorhabditis japonica CJA12147 N
CRE29609 Caenorhabditis remanei CRE29609 N
DICVIV_00304 Dictyocaulus viviparus DICVIV_00304 N
DME_0000214701 Dracunculus medinensis DME_0000214701 N
HCOI01584000 Haemonchus contortus HCOI01584000 N
L596_g21063 Steinernema carpocapsae L596_g21063 N
L898_g4344 Steinernema monticolum L898_g4344 N
MhA1_Contig659.frz3.gene12 Meloidogyne hapla MhA1_Contig659.frz3.gene12 N
Minc00757 Meloidogyne incognita Minc00757 N
Minc01466 Meloidogyne incognita Minc01466 N
NBR_0000065601 Nippostrongylus brasiliensis NBR_0000065601 N
NECAME_05919 Necator americanus NECAME_05919 N
PEQ_0000361701 Parascaris equorum PEQ_0000361701 N
PTRK_0001052400 Parastrongyloides trichosuri PTRK_0001052400 N
RSKR_0000114000 Rhabditophanes kr3021 RSKR_0000114000 N
SPAL_0000096300 Strongyloides papillosus SPAL_0000096300 N
SSTP_0000137400 Strongyloides stercoralis SSTP_0000137400 N
SVE_0382900 Strongyloides venezuelensis SVE_0382900 N
SVUK_0001641001 Strongylus vulgaris SVUK_0001641001 N
tag-68 Caenorhabditis elegans WBGene00006445 N
TCNE_0001786701 Toxocara canis TCNE_0001786701 N
TELCIR_17986 Teladorsagia circumcincta TELCIR_17986 N
TELCIR_19586 Teladorsagia circumcincta TELCIR_19586 N
TELCIR_20778 Teladorsagia circumcincta TELCIR_20778 N