PK27255.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK27255.1 T144921_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.848
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.848
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK27255.1 C2H2 ZF 67 89
PK27255.1 C2H2 ZF 111 133

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

384 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000261401 Angiostrongylus cantonensis ACAC_0000261401 N
ACOC_0000445401 Angiostrongylus costaricensis ACOC_0000445401 N
ALUE_0000466001 Ascaris lumbricoides ALUE_0000466001 N
ANCCAN_24904 Ancylostoma caninum ANCCAN_24904 N
ANCCEY_13945 Ancylostoma ceylanicum ANCCEY_13945 N
ANCDUO_07053 Ancylostoma duodenale ANCDUO_07053 N
ASIM_0001352101 Anisakis simplex ASIM_0001352101 N
ASU_08380 Ascaris suum ASU_08380 N
DICVIV_02602 Dictyocaulus viviparus DICVIV_02602 N
Hba_00983 Heterorhabditis bacteriophora Hba_00983 N
HCOI00027700 Haemonchus contortus HCOI00027700 N
HPLM_0001420401 Haemonchus placei HPLM_0001420401 N
NBR_0001408501 Nippostrongylus brasiliensis NBR_0001408501 N
NECAME_01427 Necator americanus NECAME_01427 N
OESDEN_00417 Oesophagostomum dentatum OESDEN_00417 N
SBAD_0000490401 Soboliphyme baturini SBAD_0000490401 N
TCLT_0000380801 Thelazia callipaeda TCLT_0000380801 N
TCNE_0001271001 Toxocara canis TCNE_0001271001 N
TELCIR_14024 Teladorsagia circumcincta TELCIR_14024 N