bcl6.L (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-984483 T145709_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.787 0.971
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.787 0.971
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.787 0.971
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.787 0.971
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.787 0.971
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.787 0.971
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.787 0.971
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.787 0.971
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.787 0.971
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.787 0.971
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.787 0.971
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.787 0.971
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.787 0.971
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.787 0.971
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.787 0.971
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.780 0.935
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH84912 C2H2 ZF 513 536
AAH84912 C2H2 ZF 541 563
AAH84912 C2H2 ZF 569 591
AAH84912 C2H2 ZF 597 619
AAH84912 C2H2 ZF 625 647
AAH84912 C2H2 ZF 653 676
AAI10966 C2H2 ZF 513 536
AAI10966 C2H2 ZF 541 563
AAI10966 C2H2 ZF 569 591
AAI10966 C2H2 ZF 597 619
AAI10966 C2H2 ZF 625 647
AAI10966 C2H2 ZF 653 676

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
BGIOSGA002833 Oryza indica BGIOSGA002833 N
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N
Ca_19863 Cicer arietinum Ca_19863 N
GLYMA06G43560 Glycine max GLYMA06G43560 N
GLYMA12G14400 Glycine max GLYMA12G14400 N
GRMZM2G043854 Zea mays GRMZM2G043854 I
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G369629 Zea mays GRMZM2G369629 N
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N
LjT46P06.140.nd Lotus japonicus LjT46P06.140.nd N
LPERR01G03590 Leersia perrieri LPERR01G03590 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR05G03980 Leersia perrieri LPERR05G03980 N
OB01G13800 Oryza brachyantha OB01G13800 N
OB03G21490 Oryza brachyantha OB03G21490 I
OB05G14140 Oryza brachyantha OB05G14140 N
OBART01G03950 Oryza barthii OBART01G03950 N
OBART03G11320 Oryza barthii OBART03G11320 I
OBART05G04450 Oryza barthii OBART05G04450 N
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N
OLONG_004075 Oryza longistaminata OLONG_004075 I
OLONG_015419 Oryza longistaminata OLONG_015419 N
OMERI01G03850 Oryza meridionalis OMERI01G03850 N
OMERI05G04410 Oryza meridionalis OMERI05G04410 N
ONIVA01G04390 Oryza nivara ONIVA01G04390 N
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
ONIVA05G04820 Oryza nivara ONIVA05G04820 N
OPUNC01G03610 Oryza punctata OPUNC01G03610 N
OPUNC05G04080 Oryza punctata OPUNC05G04080 N
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N
OS03G0260600 Oryza sativa OS03G0260600 I
OS05G0163900 Oryza sativa OS05G0163900 N
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
Pavir.J32610 Panicum virgatum Pavir.J32610 N
Sb01g040450 Sorghum bicolor Sb01g040450 I
Sb03g005250 Sorghum bicolor Sb03g005250 N
Sb09g004820 Sorghum bicolor Sb09g004820 N
Si002655m.g Setaria italica Si002655m.g I
Si012213m.g Setaria italica Si012213m.g N
Si039730m.g Setaria italica Si039730m.g I
TCM_001690 Theobroma cacao TCM_001690 N