ALUE_0002049001 (Ascaris lumbricoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ALUE_0002049001 T151972_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.770 0.781
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.770 0.781
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.770 0.781
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.770 0.781
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.763
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.763
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.763
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.763
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.760 0.754
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.760 0.754
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.760 0.754
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0002049001-mRNA-1 C2H2 ZF 40 62
ALUE_0002049001-mRNA-1 C2H2 ZF 71 93
ALUE_0002049001-mRNA-1 C2H2 ZF 97 119
ALUE_0002049001-mRNA-1 C2H2 ZF 125 147
ALUE_0002049001-mRNA-1 C2H2 ZF 155 176

Links

Other C2H2 ZF family TFs
Other Ascaris lumbricoides TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01715 Capronia coronata A1O1_01715 I
ACLA_027040 Aspergillus clavatus CADACLAG00002999 I
ACRE_005080 Acremonium chrysogenum ACRE_005080 I
ARB_04236 Arthroderma benhamiae ARB_04236 I
AUEXF2481DRAFT_1990 Aureobasidium subglaciale AUEXF2481DRAFT_1990 I
BAUCODRAFT_53101 Baudoinia compniacensis BAUCODRAFT_53101 I
Bcin02g02300 Botrytis cinerea Bcin02g02300 I
BDDG_09774 Blastomyces dermatitidis BDDG_09774 I
CADAFLAG00004136 Aspergillus flavus CADAFLAG00004136 I
CADANGAG00006293 Aspergillus niger CADANGAG00006293 I
CCM_04761 Cordyceps militaris CCM_04761 I
CFIO01_13406 Colletotrichum fioriniae CFIO01_13406 I
CGGC5_10716 Colletotrichum gloeosporioides CGGC5_10716 I
CH063_01246 Colletotrichum higginsianum CH063_01246 I
CHGG_10355 Chaetomium globosum CHGG_10355 I
CIMG_02531 Coccidioides immitis CIMG_02531 I
CMQ_4895 Grosmannia clavigera CMQ_4895 I
Cob_07346 Colletotrichum orbiculare Cob_07346 I
CPC735_037910 Coccidioides posadasii CPC735_037910 I
CPUR_08385 Claviceps purpurea CPUR_08385 I
CSUB01_09077 Colletotrichum sublineola CSUB01_09077 I
CTHT_0008390 Chaetomium thermophilum CTHT_0008390 I
EURHEDRAFT_22412 Aspergillus ruber EURHEDRAFT_22412 I
F503_04373 Ophiostoma piceae uamh F503_04373 I
fgenesh1_pg.sca_1_chr1_3_0000687 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000687 I
fgenesh3_pm.C_scaffold_10000323 Neurospora discreta fgenesh3_pm.C_scaffold_10000323 I
FGRRES_00318 Fusarium graminearum FGRRES_00318 I
FPSE_07692 Fusarium pseudograminearum FPSE_07692 I
G647_03448 Cladophialophora carrionii G647_03448 I
GGTG_12982 Gaeumannomyces graminis GGTG_12982 I
GLRG_07358 Colletotrichum graminicola GLRG_07358 I
GMDG_00077 Pseudogymnoascus destructans GMDG_00077 I
gw1.2.720.1 Cryphonectria parasitica gw1.2.720.1 I
gw1.2.915.1 Mycosphaerella graminicola gw1.2.915.1 I
H101_04388 Trichophyton interdigitale H101_04388 I
H102_02726 Trichophyton rubrum H102_02726 I
H105_02744 Trichophyton soudanense H105_02744 I
HMPREF1541_11021 Cyphellophora europaea HMPREF1541_11021 N
HMPREF1624_03400 Sporothrix schenckii HMPREF1624_03400 I
M437DRAFT_12002 Aureobasidium melanogenum M437DRAFT_12002 I
M438DRAFT_283552 Aureobasidium pullulans M438DRAFT_283552 I
MAC_06559 Metarhizium acridum MAC_06559 I
MAJ_07299 Metarhizium majus MAJ_07299 I
MAM_00987 Metarhizium album MAM_00987 I
MANI_017733 Metarhizium anisopliae MANI_017733 I
MAPG_08672 Magnaporthe poae MAPG_08672 I
MBM_02301 Marssonina brunnea MBM_02301 I
MBR_05142 Metarhizium brunneum MBR_05142 I
MCYG_05302 Microsporum canis MCYG_05302 I
MCYG_05302 Arthroderma otae MCYG_05302 I
MGG_15357 Magnaporthe oryzae MGG_15357 I
MGU_01530 Metarhizium guizhouense MGU_01530 I
MGYG_06353 Microsporum gypseum MGYG_06353 I
MYCFIDRAFT_150925 Pseudocercospora fijiensis MYCFIDRAFT_150925 I
Mycgr3G18493 Zymoseptoria tritici Mycgr3G18493 I
MYCTH_109046 Myceliophthora thermophila MYCTH_109046 I
NCU01706 Neurospora crassa NCU01706 D
NechaG75076 Fusarium solani NechaG75076 I
NEUTE1DRAFT_101778 Neurospora tetrasperma NEUTE1DRAFT_101778 I
OCS_06093 Ophiocordyceps sinensis OCS_06093 I
Pc12g05270 Penicillium chrysogenum Pc12g05270 I
PCH_Pc12g05270 Penicillium rubens PCH_Pc12g05270 I
PDE_02360 Penicillium oxalicum PDE_02360 I
PDIP_34590 Penicillium digitatum PDIP_34590 I
PEX1_091250 Penicillium expansum PEX1_091250 I
PITC_075220 Penicillium italicum PITC_075220 I
PMAA_096140 Penicillium marneffei PMAA_096140 I
PMAA_096140 Talaromyces marneffei PMAA_096140 I
PV10_03876 Exophiala mesophila PV10_03876 I
PVAR5_6000 Byssochlamys spectabilis PVAR5_6000 I
S40285_03377 Stachybotrys chlorohalonata S40285_03377 I
S40288_05289 Stachybotrys chartarum S40288_05289 I
SEPMUDRAFT_123869 Sphaerulina musiva SEPMUDRAFT_123869 I
SPBR_01773 Sporothrix brasiliensis SPBR_01773 I
SS1G_01859 Sclerotinia sclerotiorum SS1G_01859 I
TEQG_06211 Trichophyton equinum TEQG_06211 I
TESG_03699 Trichophyton tonsurans TESG_03699 I
THITE_16965 Thielavia terrestris THITE_16965 I
TRIATDRAFT_289913 Trichoderma atroviride TRIATDRAFT_289913 I
TRV_05271 Trichophyton verrucosum TRV_05271 I
TSTA_045180 Talaromyces stipitatus TSTA_045180 I
U727_0043108001 Penicillium solitum U727_0043108001 I
UCREL1_549 Eutypa lata UCREL1_549 I
UV8b_756 Ustilaginoidea virens UV8b_756 I
VDAG_06776 Verticillium dahliae VDAG_06776 I
W97_01044 Coniosporium apollinis W97_01044 I
X797_006944 Metarhizium robertsii X797_006944 I
Z519_06848 Cladophialophora bantiana Z519_06848 I