L596_g18433 (Steinernema carpocapsae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L596_g18433 T154334_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.769 0.848
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.769 0.848
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.769 0.848
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.768 0.848
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.768 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L596_g18433.t1 C2H2 ZF 76 98
L596_g18433.t1 C2H2 ZF 104 126
L596_g18433.t1 C2H2 ZF 132 154
L596_g18433.t1 C2H2 ZF 160 182
L596_g18433.t1 C2H2 ZF 188 210
L596_g18433.t1 C2H2 ZF 216 239

Links

Other C2H2 ZF family TFs
Other Steinernema carpocapsae TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I 0.000
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I 0.000
Aquca_024_00067 Aquilegia coerulea Aquca_024_00067 N 0.000
BGIOSGA019116 Oryza indica BGIOSGA019116 N 0.000
BGIOSGA019118 Oryza indica BGIOSGA019118 I 0.000
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N 0.000
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I 0.000
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I 0.000
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I 0.000
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I 0.000
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I 0.000
Lus10040428.g Linum usitatissimum Lus10040428.g I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
MLOC_52125 Hordeum vulgare MLOC_52125 N 0.000
MTR_1g087040 Medicago truncatula MTR_1g087040 I 0.000
OB05G12090 Oryza brachyantha OB05G12090 N 0.000
OBART05G02070 Oryza barthii OBART05G02070 N 0.000
OGLUM05G02130 Oryza glumaepatula OGLUM05G02130 N 0.000
OMERI05G02170 Oryza meridionalis OMERI05G02170 N 0.000
ONIVA05G02010 Oryza nivara ONIVA05G02010 I 0.000
OPUNC05G01750 Oryza punctata OPUNC05G01750 N 0.000
ORGLA05G0020300 Oryza glaberrima ORGLA05G0020300 N 0.000
ORUFI05G02170 Oryza rufipogon ORUFI05G02170 N 0.000
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N 0.000
Pavir.J06041 Panicum virgatum Pavir.J06041 N 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
Si023562m.g Setaria italica Si023562m.g N 0.000
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N 0.000
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N 0.000
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000