CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig1983.frz3.gene6
(
Meloidogyne hapla
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
MhA1_Contig1983.frz3.gene6
T154973_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig1983.frz3.gene6
C2H2 ZF
348
371
FKCNLCTQKFLTPRKLRKHKKMSH
MhA1_Contig1983.frz3.gene6
C2H2 ZF
377
399
YQCHFCEELFISETAVTTHERIH
MhA1_Contig1983.frz3.gene6
C2H2 ZF
405
428
FECKICDFKCNRFLNMEEHRKDEH
MhA1_Contig1983.frz3.gene6
C2H2 ZF
430
453
YLCTICQSKLGEWADLKNHMLIEH
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne hapla
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf25160-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf25160-processed-gene-0.0
N
0.827
snap_masked-nMf.1.1.scaf04029-processed-gene-0.4
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf04029-processed-gene-0.4
N
0.827