PXEA_0003135501 (Protopolystoma xenopodis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PXEA_0003135501 T155854_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gl
M03671_2.00 		Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY		 SELEX
Nitta et al.(2015)
gl_1 		0.774 0.798
gl
M06078_2.00 		Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH		 B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618 		0.774 0.798
gl
M06079_2.00 		Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA		 B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618 		0.774 0.798
gl
M06080_2.00 		Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN		 B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618 		0.774 0.798
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0003135501-mRNA-1 C2H2 ZF 452 473
PXEA_0003135501-mRNA-1 C2H2 ZF 479 501
PXEA_0003135501-mRNA-1 C2H2 ZF 507 529
PXEA_0003135501-mRNA-1 C2H2 ZF 535 557
PXEA_0003135501-mRNA-1 C2H2 ZF 563 585

Links

Other C2H2 ZF family TFs
Other Protopolystoma xenopodis TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10013605 Chelonia mydas Cmyd_10013605 I
ENSAMEG00000013214 Ailuropoda melanoleuca ENSAMEG00000013214 I
ENSCSAG00000017134 Chlorocebus sabaeus ENSCSAG00000017134 I
ENSGMOG00000007778 Gadus morhua ENSGMOG00000007778 N
ENSLOCG00000014493 Lepisosteus oculatus ENSLOCG00000014493 I
ENSLOCG00000014496 Lepisosteus oculatus ENSLOCG00000014496 I
ENSONIG00000002991 Oreochromis niloticus ENSONIG00000002991 I
ENSORLG00000014656 Oryzias latipes ENSORLG00000014656 I
ENSORLG00000014659 Oryzias latipes ENSORLG00000014659 I
ENSP00000300057-D1 Bos grunniens ENSP00000300057-D1 I
ENSPFOG00000015962 Poecilia formosa ENSPFOG00000015962 N
ENSPPYG00000006771 Pongo abelii ENSPPYG00000006771 I
ENSPPYG00000006864 Pongo abelii ENSPPYG00000006864 I
ENSTNIG00000000556 Tetraodon nigroviridis ENSTNIG00000000556 N
ENSTNIG00000011917 Tetraodon nigroviridis ENSTNIG00000011917 N
ENSTRUG00000015314 Takifugu rubripes ENSTRUG00000015314 N
ENSTRUG00000015316 Takifugu rubripes ENSTRUG00000015316 I
ENSXMAG00000016981 Xiphophorus maculatus ENSXMAG00000016981 N
MESP1 Macaca mulatta ENSMMUG00000010586 I
MESP1 Monodelphis domestica ENSMODG00000019538 I
MESP1 Canis familiaris ENSCAFG00000030023 I
MESP1 Loxodonta africana ENSLAFG00000022195 I
MESP1 Procavia capensis ENSPCAG00000008272 I
MESP1 Gorilla gorilla ENSGGOG00000014946 I
MESP1 Homo sapiens ENSG00000166823 D
MESP1 Felis catus ENSFCAG00000008973 I
MESP1 Pteropus vampyrus ENSPVAG00000010571 I
MESP1 Sus scrofa ENSSSCG00000001847 I
MESP2 Bos taurus ENSBTAG00000027058 I
MESP2 Tursiops truncatus ENSTTRG00000015545 I
MESP2 Sus scrofa ENSSSCG00000001848 I
Mesp2 Rattus norvegicus ENSRNOG00000014925 I
Mesp2 Mus musculus ENSMUSG00000030543 I
MESP2 Dasypus novemcinctus ENSDNOG00000037045 I
MESP2 Cavia porcellus ENSCPOG00000019717 I
mespab Danio rerio ENSDARG00000068761 I
mespb Xenopus tropicalis XB-GENE-970939 N
mespb.L Xenopus laevis XB-GENE-970944 N
mespb.S Xenopus laevis XB-GENE-17337060 N
mespba Danio rerio ENSDARG00000030347 N
mespbb Danio rerio ENSDARG00000097947 N